Analysis of interatomic Contacts of Structural Units in PDB entry:
5NW7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NW7 entry

There is 1 chain in PDB entry 5NW7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ALA 441
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5NW7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 24Right-handed 310
Helix 2
AA2
A
25 35Right-handed alpha
Helix 3
AA3
A
68 76Right-handed alpha
Helix 4
AA4
A
76 81Right-handed alpha
Helix 5
AA5
A
82 90Right-handed alpha
Helix 6
AA6
A
115 126Right-handed alpha
Helix 7
AA7
A
154 165Right-handed alpha
Helix 8
AA8
A
165 173Right-handed alpha
Helix 9
AA9
A
173 184Right-handed alpha
Helix 10
AB1
A
192 211Right-handed alpha
Helix 11
AB2
A
213 231Right-handed alpha
Helix 12
AB3
A
231 239Right-handed alpha
Helix 13
AB4
A
241 253Right-handed alpha
Helix 14
AB5
A
257 262Right-handed alpha
Helix 15
AB6
A
313 321Right-handed alpha
Helix 16
AB7
A
327 332Right-handed 310
Helix 17
AB8
A
398 402Right-handed 310
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There are 5 sheets in PDB entry 5NW7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
6 11anti-parallel
Strand 3
A
410 413anti-parallel
Strand 4
A
382 388anti-parallel
Strand 5
A
433 438anti-parallel
Strand 6
A
359 364anti-parallel
Strand 7
A
347 351anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
48 51anti-parallel
Strand 3
A
97 104anti-parallel
Strand 4
A
285 297anti-parallel
Strand 5
A
146 152anti-parallel
Strand 6
A
266 271anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
48 51anti-parallel
Strand 3
A
97 104anti-parallel
Strand 4
A
285 297anti-parallel
Strand 5
A
138 142anti-parallel
Strand 6
A
276 279anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 112first strand
Strand 2
A
303 306anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 343first strand
Strand 2
A
372 375anti-parallel
Strand 3
A
419 423anti-parallel
Strand 4
A
390 395anti-parallel
Strand 5
A
403 406anti-parallel
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