Analysis of interatomic Contacts of Structural Units in PDB entry:
5NW9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NW9 entry

There are 3 chains in PDB entry 5NW9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 161SER 608
B
 GLY 161SER 608
C
 T -8 A 0
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5NW9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
175 179Right-handed 310
Helix 2
AA2
A
184 190Right-handed alpha
Helix 3
AA3
A
191 194Right-handed 310
Helix 4
AA4
A
207 215Right-handed alpha
Helix 5
AA5
A
216 220Right-handed 310
Helix 6
AA6
A
231 243Right-handed alpha
Helix 7
AA7
A
285 290Right-handed 310
Helix 8
AA8
A
318 329Right-handed alpha
Helix 9
AA9
A
332 344Right-handed alpha
Helix 10
AB1
A
365 369Right-handed 310
Helix 11
AB2
A
370 383Right-handed alpha
Helix 12
AB3
A
388 392Right-handed 310
Helix 13
AB4
A
414 422Right-handed alpha
Helix 14
AB5
A
443 449Right-handed alpha
Helix 15
AB6
A
453 460Right-handed 310
Helix 16
AB7
A
463 469Right-handed alpha
Helix 17
AB8
A
470 475Right-handed 310
Helix 18
AB9
A
482 486Right-handed 310
Helix 19
AC1
A
518 523Right-handed alpha
Helix 20
AC2
A
544 549Right-handed 310
Helix 21
AC3
B
175 179Right-handed 310
Helix 22
AC4
B
184 190Right-handed alpha
Helix 23
AC5
B
191 194Right-handed 310
Helix 24
AC6
B
207 215Right-handed alpha
Helix 25
AC7
B
216 220Right-handed 310
Helix 26
AC8
B
231 243Right-handed alpha
Helix 27
AC9
B
285 290Right-handed 310
Helix 28
AD1
B
318 331Right-handed alpha
Helix 29
AD2
B
332 344Right-handed alpha
Helix 30
AD3
B
365 369Right-handed 310
Helix 31
AD4
B
370 383Right-handed alpha
Helix 32
AD5
B
388 392Right-handed 310
Helix 33
AD6
B
407 411Right-handed 310
Helix 34
AD7
B
414 422Right-handed alpha
Helix 35
AD8
B
443 449Right-handed alpha
Helix 36
AD9
B
453 460Right-handed 310
Helix 37
AE1
B
463 469Right-handed alpha
Helix 38
AE2
B
470 475Right-handed 310
Helix 39
AE3
B
482 486Right-handed 310
Helix 40
AE4
B
518 523Right-handed alpha
Helix 41
AE5
B
544 549Right-handed 310
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There are 8 sheets in PDB entry 5NW9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
295 298anti-parallel
Strand 3
A
275 280anti-parallel
Strand 4
A
266 271anti-parallel
Strand 5
A
196 202anti-parallel
Strand 6
A
224 228parallel
Strand 7
A
248 252parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 357first strand
Strand 2
A
538 543anti-parallel
Strand 3
A
506 513anti-parallel
Strand 4
A
495 500anti-parallel
Strand 5
A
394 397anti-parallel
Strand 6
A
437 440parallel
Strand 7
A
477 478parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 357first strand
Strand 2
A
538 543anti-parallel
Strand 3
A
506 513anti-parallel
Strand 4
A
553 555anti-parallel
Strand 5
A
569 570parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 363first strand
Strand 2
A
531 534anti-parallel
Strand 3
A
524 526anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 168first strand
Strand 2
B
295 298anti-parallel
Strand 3
B
275 280anti-parallel
Strand 4
B
266 271anti-parallel
Strand 5
B
196 202anti-parallel
Strand 6
B
224 228parallel
Strand 7
B
248 252parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 357first strand
Strand 2
B
538 543anti-parallel
Strand 3
B
506 513anti-parallel
Strand 4
B
495 500anti-parallel
Strand 5
B
394 397anti-parallel
Strand 6
B
437 440parallel
Strand 7
B
477 478parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 357first strand
Strand 2
B
538 543anti-parallel
Strand 3
B
506 513anti-parallel
Strand 4
B
553 555anti-parallel
Strand 5
B
569 570parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 363first strand
Strand 2
B
531 534anti-parallel
Strand 3
B
524 526anti-parallel
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