Analysis of interatomic Contacts of Structural Units in PDB entry:
5NWN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NWN entry

There are 4 chains in PDB entry 5NWN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 7	LEU 502
B	PRO 7	LEU 502
C	PRO 7	LEU 502
D	PRO 7	LEU 502

There are 68 helices in PDB entry 5NWN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	15	Right-handed 310
Helix 2	AA2	A	23	27	Right-handed 310
Helix 3	AA3	A	57	63	Right-handed alpha
Helix 4	AA4	A	73	78	Right-handed alpha
Helix 5	AA5	A	80	89	Right-handed alpha
Helix 6	AA6	A	138	149	Right-handed alpha
Helix 7	AA7	A	152	169	Right-handed alpha
Helix 8	AA8	A	209	219	Right-handed alpha
Helix 9	AA9	A	257	266	Right-handed alpha
Helix 10	AB1	A	298	344	Right-handed alpha
Helix 11	AB2	A	347	354	Right-handed alpha
Helix 12	AB3	A	358	363	Right-handed alpha
Helix 13	AB4	A	384	398	Right-handed alpha
Helix 14	AB5	A	407	412	Right-handed alpha
Helix 15	AB6	A	413	416	Right-handed 310
Helix 16	AB7	A	464	476	Right-handed alpha
Helix 17	AB8	A	484	500	Right-handed alpha
Helix 18	AB9	B	11	15	Right-handed 310
Helix 19	AC1	B	23	27	Right-handed 310
Helix 20	AC2	B	57	63	Right-handed alpha
Helix 21	AC3	B	73	78	Right-handed alpha
Helix 22	AC4	B	80	89	Right-handed alpha
Helix 23	AC5	B	138	149	Right-handed alpha
Helix 24	AC6	B	152	169	Right-handed alpha
Helix 25	AC7	B	209	219	Right-handed alpha
Helix 26	AC8	B	257	266	Right-handed alpha
Helix 27	AC9	B	298	344	Right-handed alpha
Helix 28	AD1	B	347	354	Right-handed alpha
Helix 29	AD2	B	358	363	Right-handed alpha
Helix 30	AD3	B	384	398	Right-handed alpha
Helix 31	AD4	B	407	412	Right-handed alpha
Helix 32	AD5	B	413	416	Right-handed 310
Helix 33	AD6	B	464	476	Right-handed alpha
Helix 34	AD7	B	484	500	Right-handed alpha
Helix 35	AD8	C	11	15	Right-handed 310
Helix 36	AD9	C	23	27	Right-handed 310
Helix 37	AE1	C	57	63	Right-handed alpha
Helix 38	AE2	C	73	78	Right-handed alpha
Helix 39	AE3	C	80	89	Right-handed alpha
Helix 40	AE4	C	138	149	Right-handed alpha
Helix 41	AE5	C	152	169	Right-handed alpha
Helix 42	AE6	C	209	219	Right-handed alpha
Helix 43	AE7	C	257	266	Right-handed alpha
Helix 44	AE8	C	298	344	Right-handed alpha
Helix 45	AE9	C	347	354	Right-handed alpha
Helix 46	AF1	C	358	363	Right-handed alpha
Helix 47	AF2	C	384	398	Right-handed alpha
Helix 48	AF3	C	407	412	Right-handed alpha
Helix 49	AF4	C	413	416	Right-handed 310
Helix 50	AF5	C	467	476	Right-handed alpha
Helix 51	AF6	C	484	500	Right-handed alpha
Helix 52	AF7	D	11	15	Right-handed 310
Helix 53	AF8	D	23	27	Right-handed 310
Helix 54	AF9	D	57	63	Right-handed alpha
Helix 55	AG1	D	73	78	Right-handed alpha
Helix 56	AG2	D	80	89	Right-handed alpha
Helix 57	AG3	D	138	149	Right-handed alpha
Helix 58	AG4	D	152	169	Right-handed alpha
Helix 59	AG5	D	209	219	Right-handed alpha
Helix 60	AG6	D	257	266	Right-handed alpha
Helix 61	AG7	D	298	344	Right-handed alpha
Helix 62	AG8	D	347	354	Right-handed alpha
Helix 63	AG9	D	358	363	Right-handed alpha
Helix 64	AH1	D	384	398	Right-handed alpha
Helix 65	AH2	D	407	412	Right-handed alpha
Helix 66	AH3	D	413	416	Right-handed 310
Helix 67	AH4	D	468	476	Right-handed alpha
Helix 68	AH5	D	484	500	Right-handed alpha

There are 16 sheets in PDB entry 5NWN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	232	235	anti-parallel
Strand 3	A	51	55	anti-parallel
Strand 4	A	40	45	anti-parallel
Strand 5	A	121	128	anti-parallel
Strand 6	A	110	118	anti-parallel
Strand 7	A	98	104	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	184	191	anti-parallel
Strand 3	A	172	178	anti-parallel
Strand 4	A	283	291	anti-parallel
Strand 5	A	271	278	anti-parallel
Strand 6	A	221	224	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	239	first strand
Strand 2	A	244	245	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	380	first strand
Strand 2	A	367	372	anti-parallel
Strand 3	A	437	442	anti-parallel
Strand 4	A	424	429	anti-parallel
Strand 5	A	402	405	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	232	235	anti-parallel
Strand 3	B	51	55	anti-parallel
Strand 4	B	40	45	anti-parallel
Strand 5	B	121	128	anti-parallel
Strand 6	B	110	118	anti-parallel
Strand 7	B	98	104	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	184	191	anti-parallel
Strand 3	B	172	178	anti-parallel
Strand 4	B	283	291	anti-parallel
Strand 5	B	271	278	anti-parallel
Strand 6	B	221	224	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	239	first strand
Strand 2	B	244	245	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	380	first strand
Strand 2	B	367	372	anti-parallel
Strand 3	B	437	442	anti-parallel
Strand 4	B	424	429	anti-parallel
Strand 5	B	402	405	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	35	first strand
Strand 2	C	232	235	anti-parallel
Strand 3	C	51	55	anti-parallel
Strand 4	C	40	45	anti-parallel
Strand 5	C	121	128	anti-parallel
Strand 6	C	110	118	anti-parallel
Strand 7	C	98	104	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	203	first strand
Strand 2	C	184	191	anti-parallel
Strand 3	C	172	178	anti-parallel
Strand 4	C	283	291	anti-parallel
Strand 5	C	271	278	anti-parallel
Strand 6	C	221	224	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	239	first strand
Strand 2	C	244	245	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	380	first strand
Strand 2	C	367	372	anti-parallel
Strand 3	C	437	442	anti-parallel
Strand 4	C	424	429	anti-parallel
Strand 5	C	402	405	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	D	232	235	anti-parallel
Strand 3	D	51	55	anti-parallel
Strand 4	D	40	45	anti-parallel
Strand 5	D	121	128	anti-parallel
Strand 6	D	110	118	anti-parallel
Strand 7	D	98	104	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	203	first strand
Strand 2	D	184	191	anti-parallel
Strand 3	D	172	178	anti-parallel
Strand 4	D	283	291	anti-parallel
Strand 5	D	271	278	anti-parallel
Strand 6	D	221	224	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	239	first strand
Strand 2	D	244	245	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	375	380	first strand
Strand 2	D	367	372	anti-parallel
Strand 3	D	437	442	anti-parallel
Strand 4	D	424	429	anti-parallel
Strand 5	D	402	405	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NWN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NWN