Analysis of interatomic Contacts of Structural Units in PDB entry:
5NWT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NWT entry

There are 6 chains in PDB entry 5NWT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	SER 325
B	SER 4	VAL 232
C	TYR 3	ASP 1341
D	MET 1	GLY 1376
E	VAL 4	GLN 81
M	UNK 16	ARG 473

There are119 helices in PDB entry 5NWT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	50	Right-handed alpha
Helix 2	AA2	A	77	87	Right-handed alpha
Helix 3	AA3	A	113	115	Right-handed 310
Helix 4	AA4	A	154	159	Right-handed alpha
Helix 5	AA5	A	212	233	Right-handed alpha
Helix 6	AA6	A	256	261	Right-handed 310
Helix 7	AA7	A	263	273	Right-handed alpha
Helix 8	AA8	A	276	282	Right-handed alpha
Helix 9	AA9	A	285	292	Right-handed alpha
Helix 10	AB1	A	297	311	Right-handed alpha
Helix 11	AB2	B	35	49	Right-handed alpha
Helix 12	AB3	B	77	88	Right-handed alpha
Helix 13	AB4	B	113	115	Right-handed 310
Helix 14	AB5	B	154	159	Right-handed alpha
Helix 15	AB6	B	212	231	Right-handed alpha
Helix 16	AB7	C	28	39	Right-handed alpha
Helix 17	AB8	C	48	56	Right-handed alpha
Helix 18	AB9	C	81	89	Right-handed alpha
Helix 19	AC1	C	206	213	Right-handed alpha
Helix 20	AC2	C	216	225	Right-handed alpha
Helix 21	AC3	C	270	281	Right-handed alpha
Helix 22	AC4	C	289	294	Right-handed 310
Helix 23	AC5	C	318	329	Right-handed alpha
Helix 24	AC6	C	346	354	Right-handed alpha
Helix 25	AC7	C	358	371	Right-handed alpha
Helix 26	AC8	C	377	389	Right-handed alpha
Helix 27	AC9	C	397	410	Right-handed alpha
Helix 28	AD1	C	421	438	Right-handed alpha
Helix 29	AD2	C	455	482	Right-handed alpha
Helix 30	AD3	C	487	493	Right-handed alpha
Helix 31	AD4	C	494	508	Right-handed alpha
Helix 32	AD5	C	519	528	Right-handed alpha
Helix 33	AD6	C	662	667	Right-handed alpha
Helix 34	AD7	C	675	688	Right-handed alpha
Helix 35	AD8	C	704	712	Right-handed alpha
Helix 36	AD9	C	819	826	Right-handed alpha
Helix 37	AE1	C	858	865	Right-handed alpha
Helix 38	AE2	C	896	907	Right-handed alpha
Helix 39	AE3	C	942	980	Right-handed alpha
Helix 40	AE4	C	1008	1039	Right-handed alpha
Helix 41	AE5	C	1101	1106	Right-handed alpha
Helix 42	AE6	C	1108	1135	Right-handed alpha
Helix 43	AE7	C	1136	1151	Right-handed alpha
Helix 44	AE8	C	1166	1177	Right-handed alpha
Helix 45	AE9	C	1191	1202	Right-handed alpha
Helix 46	AF1	C	1238	1243	Right-handed alpha
Helix 47	AF2	C	1270	1282	Right-handed alpha
Helix 48	AF3	C	1283	1289	Right-handed alpha
Helix 49	AF4	C	1297	1310	Right-handed alpha
Helix 50	AF5	C	1320	1332	Right-handed alpha
Helix 51	AF6	D	2	12	Right-handed alpha
Helix 52	AF7	D	26	34	Right-handed alpha
Helix 53	AF8	D	113	118	Right-handed alpha
Helix 54	AF9	D	122	129	Right-handed alpha
Helix 55	AG1	D	131	140	Right-handed alpha
Helix 56	AG2	D	161	172	Right-handed alpha
Helix 57	AG3	D	181	192	Right-handed alpha
Helix 58	AG4	D	193	208	Right-handed alpha
Helix 59	AG5	D	210	231	Right-handed alpha
Helix 60	AG6	D	233	236	Right-handed 310
Helix 61	AG7	D	263	286	Right-handed alpha
Helix 62	AG8	D	288	308	Right-handed alpha
Helix 63	AG9	D	326	333	Right-handed alpha
Helix 64	AH1	D	370	377	Right-handed alpha
Helix 65	AH2	D	377	389	Right-handed alpha
Helix 66	AH3	D	393	404	Right-handed alpha
Helix 67	AH4	D	405	415	Right-handed alpha
Helix 68	AH5	D	430	432	Right-handed 310
Helix 69	AH6	D	453	458	Right-handed alpha
Helix 70	AH7	D	473	483	Right-handed alpha
Helix 71	AH8	D	504	514	Right-handed alpha
Helix 72	AH9	D	529	540	Right-handed alpha
Helix 73	AI1	D	573	580	Right-handed alpha
Helix 74	AI2	D	581	583	Right-handed 310
Helix 75	AI3	D	588	593	Right-handed alpha
Helix 76	AI4	D	598	612	Right-handed alpha
Helix 77	AI5	D	613	636	Right-handed alpha
Helix 78	AI6	D	649	671	Right-handed alpha
Helix 79	AI7	D	674	703	Right-handed alpha
Helix 80	AI8	D	720	729	Right-handed alpha
Helix 81	AI9	D	733	741	Right-handed alpha
Helix 82	AJ1	D	768	805	Right-handed alpha
Helix 83	AJ2	D	834	840	Right-handed alpha
Helix 84	AJ3	D	865	875	Right-handed alpha
Helix 85	AJ4	D	895	900	Right-handed alpha
Helix 86	AJ5	D	914	925	Right-handed alpha
Helix 87	AJ6	D	926	929	Right-handed 310
Helix 88	AJ7	D	1137	1147	Right-handed alpha
Helix 89	AJ8	D	1216	1224	Right-handed alpha
Helix 90	AJ9	D	1225	1245	Right-handed alpha
Helix 91	AK1	D	1249	1261	Right-handed alpha
Helix 92	AK2	D	1280	1293	Right-handed alpha
Helix 93	AK3	D	1308	1315	Right-handed alpha
Helix 94	AK4	D	1318	1326	Right-handed alpha
Helix 95	AK5	D	1327	1339	Right-handed alpha
Helix 96	AK6	D	1346	1354	Right-handed alpha
Helix 97	AK7	D	1360	1374	Right-handed alpha
Helix 98	AK8	E	6	13	Right-handed alpha
Helix 99	AK9	E	16	32	Right-handed alpha
Helix 100	AL1	E	45	57	Right-handed alpha
Helix 101	AL2	E	60	81	Right-handed alpha
Helix 102	AL3	M	17	21	Right-handed alpha
Helix 103	AL4	M	29	44	Right-handed alpha
Helix 104	AL5	M	57	64	Right-handed alpha
Helix 105	AL6	M	120	131	Right-handed alpha
Helix 106	AL7	M	135	147	Right-handed alpha
Helix 107	AL8	M	157	166	Right-handed alpha
Helix 108	AL9	M	171	183	Right-handed alpha
Helix 109	AM1	M	196	206	Right-handed alpha
Helix 110	AM2	M	213	220	Right-handed alpha
Helix 111	AM3	M	235	240	Right-handed alpha
Helix 112	AM4	M	242	256	Right-handed alpha
Helix 113	AM5	M	304	310	Right-handed alpha
Helix 114	AM6	M	321	355	Right-handed alpha
Helix 115	AM7	M	368	373	Right-handed alpha
Helix 116	AM8	M	377	386	Right-handed alpha
Helix 117	AM9	M	416	430	Right-handed alpha
Helix 118	AN1	M	438	450	Right-handed alpha
Helix 119	AN2	M	454	466	Right-handed alpha

There are 44 sheets in PDB entry 5NWT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	203	206	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	105	first strand
Strand 2	A	139	149	anti-parallel
Strand 3	A	53	59	anti-parallel
Strand 4	A	171	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	121	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	129	133	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	175	176	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	58	first strand
Strand 2	B	143	149	anti-parallel
Strand 3	B	98	101	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	121	123	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	139	140	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	111	first strand
Strand 2	B	129	133	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	175	176	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	185	first strand
Strand 2	B	203	204	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	192	first strand
Strand 2	B	195	200	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1182	1183	parallel
Strand 3	C	700	701	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	69	first strand
Strand 2	C	101	104	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	98	first strand
Strand 2	C	122	128	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	142	145	anti-parallel
Strand 3	C	512	514	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	453	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	530	531	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	173	176	anti-parallel
Strand 3	C	184	186	anti-parallel
Strand 4	C	195	198	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	256	first strand
Strand 2	C	261	263	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	316	first strand
Strand 2	C	296	297	anti-parallel
Strand 3	C	335	336	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	302	first strand
Strand 2	C	309	311	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	593	anti-parallel
Strand 3	C	603	606	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	593	anti-parallel
Strand 3	C	652	654	anti-parallel
Strand 4	C	615	617	parallel
Strand 5	C	635	638	anti-parallel
Strand 6	C	641	644	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	782	785	anti-parallel
Strand 3	C	768	769	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	722	723	first strand
Strand 2	C	776	777	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	798	799	first strand
Strand 2	C	1231	1232	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	802	803	first strand
Strand 2	C	1227	1228	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	815	816	first strand
Strand 2	C	1073	1076	parallel
Strand 3	C	1065	1067	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	833	first strand
Strand 2	C	1050	1058	anti-parallel
Strand 3	C	927	933	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	884	first strand
Strand 2	C	918	919	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1340	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	1341	1342	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	112	first strand
Strand 2	D	238	242	anti-parallel

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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	357	first strand
Strand 2	D	447	449	parallel
Strand 3	D	365	369	anti-parallel
Strand 4	D	434	442	parallel
Strand 5	D	421	424	anti-parallel
Strand 6	D	465	469	anti-parallel
Strand 7	D	350	357	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	983	985	first strand
Strand 2	D	956	959	anti-parallel
Strand 3	D	1010	1011	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	973	974	first strand
Strand 2	D	1002	1003	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1025	1028	first strand
Strand 2	D	1120	1124	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1033	1034	first strand
Strand 2	D	1114	1115	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1036	1038	first strand
Strand 2	D	1077	1079	anti-parallel
Strand 3	D	1098	1099	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1162	1166	first strand
Strand 2	D	1174	1178	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1277	1279	first strand
Strand 2	D	1263	1266	anti-parallel
Strand 3	D	1302	1304	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	278	280	first strand
Strand 2	M	287	289	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	390	391	first strand
Strand 2	M	396	397	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NWT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NWT