Analysis of interatomic Contacts of Structural Units in PDB entry:
5NX2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NX2 entry

There are 3 chains in PDB entry 5NX2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 29TRP 417
B
 GLY 3THR 4
B
 THR 6ASP 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5NX2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 53Right-handed alpha
Helix 2
AA2
A
91 95Right-handed 310
Helix 3
AA3
A
123 126Right-handed 310
Helix 4
AA4
A
127 132Right-handed alpha
Helix 5
AA5
A
138 169Right-handed alpha
Helix 6
AA6
A
170 173Right-handed 310
Helix 7
AA7
A
174 205Right-handed alpha
Helix 8
AA8
A
215 223Right-handed alpha
Helix 9
AA9
A
223 257Right-handed alpha
Helix 10
AB1
A
262 291Right-handed alpha
Helix 11
AB2
A
292 296Right-handed 310
Helix 12
AB3
A
302 335Right-handed alpha
Helix 13
AB4
A
340 358Right-handed alpha
Helix 14
AB5
A
360 372Right-handed alpha
Helix 15
AB6
A
377 403Right-handed alpha
Helix 16
AB7
A
406 417Right-handed alpha
Helix 17
AB8
B
3 4Right-handed 310
Helix 18
AB9
B
6 8Right-handed 310
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There are 2 sheets in PDB entry 5NX2. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
71 72anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 84first strand
Strand 2
A
99 104anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il