Analysis of interatomic Contacts of Structural Units in PDB entry:
5NXA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NXA entry

There are 8 chains in PDB entry 5NXA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 8	LEU 484
B	GLY 8	LEU 484
C	SER 9	LEU 482
D	GLY 8	LEU 484
E	GLY 8	LEU 484
F	GLY 8	LEU 484
G	SER 9	LEU 484
H	GLY 8	LEU 484

There are191 helices in PDB entry 5NXA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	20	Right-handed alpha
Helix 2	AA2	A	23	30	Right-handed alpha
Helix 3	AA3	A	31	53	Right-handed alpha
Helix 4	AA4	A	58	68	Right-handed alpha
Helix 5	AA5	A	73	85	Right-handed alpha
Helix 6	AA6	A	86	99	Right-handed alpha
Helix 7	AA7	A	112	149	Right-handed alpha
Helix 8	AA8	A	168	193	Right-handed alpha
Helix 9	AA9	A	205	212	Right-handed alpha
Helix 10	AB1	A	215	230	Right-handed alpha
Helix 11	AB2	A	245	275	Right-handed alpha
Helix 12	AB3	A	298	314	Right-handed alpha
Helix 13	AB4	A	315	324	Right-handed alpha
Helix 14	AB5	A	330	332	Right-handed 310
Helix 15	AB6	A	333	361	Right-handed alpha
Helix 16	AB7	A	365	381	Right-handed alpha
Helix 17	AB8	A	381	392	Right-handed alpha
Helix 18	AB9	A	395	417	Right-handed alpha
Helix 19	AC1	A	422	430	Right-handed alpha
Helix 20	AC2	A	431	438	Right-handed 310
Helix 21	AC3	A	439	444	Right-handed alpha
Helix 22	AC4	A	445	450	Right-handed 310
Helix 23	AC5	A	452	464	Right-handed alpha
Helix 24	AC6	A	465	470	Right-handed alpha
Helix 25	AC7	A	471	476	Right-handed 310
Helix 26	AC8	B	15	20	Right-handed alpha
Helix 27	AC9	B	23	30	Right-handed alpha
Helix 28	AD1	B	31	45	Right-handed alpha
Helix 29	AD2	B	111	149	Right-handed alpha
Helix 30	AD3	B	168	193	Right-handed alpha
Helix 31	AD4	B	205	212	Right-handed alpha
Helix 32	AD5	B	215	230	Right-handed alpha
Helix 33	AD6	B	245	275	Right-handed alpha
Helix 34	AD7	B	298	314	Right-handed alpha
Helix 35	AD8	B	315	324	Right-handed alpha
Helix 36	AD9	B	330	332	Right-handed 310
Helix 37	AE1	B	333	361	Right-handed alpha
Helix 38	AE2	B	365	381	Right-handed alpha
Helix 39	AE3	B	381	392	Right-handed alpha
Helix 40	AE4	B	395	417	Right-handed alpha
Helix 41	AE5	B	422	430	Right-handed alpha
Helix 42	AE6	B	431	438	Right-handed 310
Helix 43	AE7	B	439	444	Right-handed alpha
Helix 44	AE8	B	445	450	Right-handed 310
Helix 45	AE9	B	452	464	Right-handed alpha
Helix 46	AF1	B	465	470	Right-handed alpha
Helix 47	AF2	B	471	476	Right-handed 310
Helix 48	AF3	C	15	20	Right-handed alpha
Helix 49	AF4	C	23	30	Right-handed alpha
Helix 50	AF5	C	31	53	Right-handed alpha
Helix 51	AF6	C	58	68	Right-handed alpha
Helix 52	AF7	C	73	85	Right-handed alpha
Helix 53	AF8	C	86	99	Right-handed alpha
Helix 54	AF9	C	112	149	Right-handed alpha
Helix 55	AG1	C	168	193	Right-handed alpha
Helix 56	AG2	C	205	212	Right-handed alpha
Helix 57	AG3	C	215	230	Right-handed alpha
Helix 58	AG4	C	245	275	Right-handed alpha
Helix 59	AG5	C	298	314	Right-handed alpha
Helix 60	AG6	C	315	324	Right-handed alpha
Helix 61	AG7	C	330	332	Right-handed 310
Helix 62	AG8	C	333	361	Right-handed alpha
Helix 63	AG9	C	365	381	Right-handed alpha
Helix 64	AH1	C	382	391	Right-handed alpha
Helix 65	AH2	C	439	444	Right-handed alpha
Helix 66	AH3	C	445	450	Right-handed 310
Helix 67	AH4	C	452	464	Right-handed alpha
Helix 68	AH5	C	465	470	Right-handed alpha
Helix 69	AH6	C	471	476	Right-handed 310
Helix 70	AH7	D	15	20	Right-handed alpha
Helix 71	AH8	D	23	30	Right-handed alpha
Helix 72	AH9	D	31	53	Right-handed alpha
Helix 73	AI1	D	58	68	Right-handed alpha
Helix 74	AI2	D	73	85	Right-handed alpha
Helix 75	AI3	D	86	97	Right-handed alpha
Helix 76	AI4	D	112	149	Right-handed alpha
Helix 77	AI5	D	168	193	Right-handed alpha
Helix 78	AI6	D	205	212	Right-handed alpha
Helix 79	AI7	D	215	230	Right-handed alpha
Helix 80	AI8	D	245	275	Right-handed alpha
Helix 81	AI9	D	298	314	Right-handed alpha
Helix 82	AJ1	D	315	324	Right-handed alpha
Helix 83	AJ2	D	330	332	Right-handed 310
Helix 84	AJ3	D	333	361	Right-handed alpha
Helix 85	AJ4	D	365	381	Right-handed alpha
Helix 86	AJ5	D	381	386	Right-handed alpha
Helix 87	AJ6	D	399	417	Right-handed alpha
Helix 88	AJ7	D	445	449	Right-handed 310
Helix 89	AJ8	D	452	464	Right-handed alpha
Helix 90	AJ9	D	465	470	Right-handed alpha
Helix 91	AK1	D	471	476	Right-handed 310
Helix 92	AK2	E	15	20	Right-handed alpha
Helix 93	AK3	E	23	30	Right-handed alpha
Helix 94	AK4	E	31	53	Right-handed alpha
Helix 95	AK5	E	58	68	Right-handed alpha
Helix 96	AK6	E	73	85	Right-handed alpha
Helix 97	AK7	E	86	99	Right-handed alpha
Helix 98	AK8	E	112	149	Right-handed alpha
Helix 99	AK9	E	168	193	Right-handed alpha
Helix 100	AL1	E	205	212	Right-handed alpha
Helix 101	AL2	E	215	230	Right-handed alpha
Helix 102	AL3	E	245	275	Right-handed alpha
Helix 103	AL4	E	298	314	Right-handed alpha
Helix 104	AL5	E	315	324	Right-handed alpha
Helix 105	AL6	E	330	332	Right-handed 310
Helix 106	AL7	E	333	361	Right-handed alpha
Helix 107	AL8	E	365	381	Right-handed alpha
Helix 108	AL9	E	381	387	Right-handed alpha
Helix 109	AM1	E	400	417	Right-handed alpha
Helix 110	AM2	E	422	430	Right-handed alpha
Helix 111	AM3	E	431	437	Right-handed 310
Helix 112	AM4	E	439	444	Right-handed alpha
Helix 113	AM5	E	445	450	Right-handed 310
Helix 114	AM6	E	452	464	Right-handed alpha
Helix 115	AM7	E	465	470	Right-handed alpha
Helix 116	AM8	E	471	476	Right-handed 310
Helix 117	AM9	F	15	20	Right-handed alpha
Helix 118	AN1	F	23	30	Right-handed alpha
Helix 119	AN2	F	31	53	Right-handed alpha
Helix 120	AN3	F	58	68	Right-handed alpha
Helix 121	AN4	F	73	85	Right-handed alpha
Helix 122	AN5	F	86	99	Right-handed alpha
Helix 123	AN6	F	111	149	Right-handed alpha
Helix 124	AN7	F	168	193	Right-handed alpha
Helix 125	AN8	F	205	212	Right-handed alpha
Helix 126	AN9	F	215	230	Right-handed alpha
Helix 127	AO1	F	245	275	Right-handed alpha
Helix 128	AO2	F	298	314	Right-handed alpha
Helix 129	AO3	F	315	324	Right-handed alpha
Helix 130	AO4	F	330	332	Right-handed 310
Helix 131	AO5	F	333	361	Right-handed alpha
Helix 132	AO6	F	365	381	Right-handed alpha
Helix 133	AO7	F	381	392	Right-handed alpha
Helix 134	AO8	F	395	417	Right-handed alpha
Helix 135	AO9	F	422	430	Right-handed alpha
Helix 136	AP1	F	431	438	Right-handed 310
Helix 137	AP2	F	439	444	Right-handed alpha
Helix 138	AP3	F	445	449	Right-handed 310
Helix 139	AP4	F	452	464	Right-handed alpha
Helix 140	AP5	F	465	470	Right-handed alpha
Helix 141	AP6	F	471	476	Right-handed 310
Helix 142	AP7	G	15	20	Right-handed alpha
Helix 143	AP8	G	23	30	Right-handed alpha
Helix 144	AP9	G	31	53	Right-handed alpha
Helix 145	AQ1	G	58	68	Right-handed alpha
Helix 146	AQ2	G	73	85	Right-handed alpha
Helix 147	AQ3	G	86	99	Right-handed alpha
Helix 148	AQ4	G	112	149	Right-handed alpha
Helix 149	AQ5	G	168	193	Right-handed alpha
Helix 150	AQ6	G	205	212	Right-handed alpha
Helix 151	AQ7	G	215	230	Right-handed alpha
Helix 152	AQ8	G	245	275	Right-handed alpha
Helix 153	AQ9	G	298	314	Right-handed alpha
Helix 154	AR1	G	315	324	Right-handed alpha
Helix 155	AR2	G	330	332	Right-handed 310
Helix 156	AR3	G	333	361	Right-handed alpha
Helix 157	AR4	G	365	381	Right-handed alpha
Helix 158	AR5	G	381	392	Right-handed alpha
Helix 159	AR6	G	395	417	Right-handed alpha
Helix 160	AR7	G	422	430	Right-handed alpha
Helix 161	AR8	G	431	438	Right-handed 310
Helix 162	AR9	G	439	444	Right-handed alpha
Helix 163	AS1	G	445	449	Right-handed 310
Helix 164	AS2	G	452	464	Right-handed alpha
Helix 165	AS3	G	465	470	Right-handed alpha
Helix 166	AS4	G	471	476	Right-handed 310
Helix 167	AS5	H	15	20	Right-handed alpha
Helix 168	AS6	H	23	30	Right-handed alpha
Helix 169	AS7	H	31	53	Right-handed alpha
Helix 170	AS8	H	58	68	Right-handed alpha
Helix 171	AS9	H	73	85	Right-handed alpha
Helix 172	AT1	H	86	99	Right-handed alpha
Helix 173	AT2	H	111	149	Right-handed alpha
Helix 174	AT3	H	168	193	Right-handed alpha
Helix 175	AT4	H	205	212	Right-handed alpha
Helix 176	AT5	H	215	230	Right-handed alpha
Helix 177	AT6	H	245	275	Right-handed alpha
Helix 178	AT7	H	298	314	Right-handed alpha
Helix 179	AT8	H	315	324	Right-handed alpha
Helix 180	AT9	H	330	332	Right-handed 310
Helix 181	AU1	H	333	361	Right-handed alpha
Helix 182	AU2	H	365	381	Right-handed alpha
Helix 183	AU3	H	381	392	Right-handed alpha
Helix 184	AU4	H	395	417	Right-handed alpha
Helix 185	AU5	H	422	430	Right-handed alpha
Helix 186	AU6	H	431	438	Right-handed 310
Helix 187	AU7	H	439	444	Right-handed alpha
Helix 188	AU8	H	445	450	Right-handed 310
Helix 189	AU9	H	452	464	Right-handed alpha
Helix 190	AV1	H	465	470	Right-handed alpha
Helix 191	AV2	H	471	476	Right-handed 310

There are 16 sheets in PDB entry 5NXA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	158	first strand
Strand 2	A	161	167	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	279	first strand
Strand 2	A	363	364	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	158	first strand
Strand 2	B	161	167	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	279	first strand
Strand 2	B	363	364	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	158	first strand
Strand 2	C	161	167	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	279	first strand
Strand 2	C	363	364	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	158	first strand
Strand 2	D	161	167	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	279	first strand
Strand 2	D	363	364	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	158	first strand
Strand 2	E	161	167	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	278	279	first strand
Strand 2	E	363	364	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	158	first strand
Strand 2	F	161	167	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	278	279	first strand
Strand 2	F	363	364	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	153	158	first strand
Strand 2	G	161	167	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	278	279	first strand
Strand 2	G	363	364	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	158	first strand
Strand 2	H	161	167	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	278	279	first strand
Strand 2	H	363	364	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NXA

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NXA