Analysis of interatomic Contacts of Structural Units in PDB entry:
5NXD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NXD entry

There are 2 chains in PDB entry 5NXD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 330LEU 632
B
 ASP 330LEU 632
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5NXD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
340 344Right-handed 310
Helix 2
AA2
A
366 383Right-handed alpha
Helix 3
AA3
A
412 419Right-handed alpha
Helix 4
AA4
A
424 445Right-handed alpha
Helix 5
AA5
A
514 519Right-handed alpha
Helix 6
AA6
A
526 541Right-handed alpha
Helix 7
AA7
A
546 550Right-handed 310
Helix 8
AA8
A
559 568Right-handed alpha
Helix 9
AA9
A
575 584Right-handed alpha
Helix 10
AB1
A
587 591Right-handed 310
Helix 11
AB2
A
593 609Right-handed alpha
Helix 12
AB3
A
616 630Right-handed alpha
Helix 13
AB4
B
340 344Right-handed 310
Helix 14
AB5
B
366 376Right-handed alpha
Helix 15
AB6
B
376 382Right-handed alpha
Helix 16
AB7
B
412 419Right-handed alpha
Helix 17
AB8
B
424 445Right-handed alpha
Helix 18
AB9
B
514 519Right-handed alpha
Helix 19
AC1
B
526 541Right-handed alpha
Helix 20
AC2
B
546 550Right-handed 310
Helix 21
AC3
B
559 568Right-handed alpha
Helix 22
AC4
B
575 584Right-handed alpha
Helix 23
AC5
B
587 591Right-handed 310
Helix 24
AC6
B
593 609Right-handed alpha
Helix 25
AC7
B
616 631Right-handed alpha
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There are 6 sheets in PDB entry 5NXD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 336first strand
Strand 2
A
346 350anti-parallel
Strand 3
A
356 362anti-parallel
Strand 4
A
400 406anti-parallel
Strand 5
A
391 397anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 448first strand
Strand 2
A
475 476anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 459first strand
Strand 2
A
465 467anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 336first strand
Strand 2
B
346 350anti-parallel
Strand 3
B
356 361anti-parallel
Strand 4
B
400 406anti-parallel
Strand 5
B
391 397anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
447 448first strand
Strand 2
B
475 476anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 459first strand
Strand 2
B
465 467anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il