Analysis of interatomic Contacts of Structural Units in PDB entry:
5NXF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NXF entry

There are 3 chains in PDB entry 5NXF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 795	GLU 1289
B	SER 795	VAL 1288
C	SER 795	VAL 1288

There are 28 helices in PDB entry 5NXF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	808	818	Right-handed alpha
Helix 2	AA2	A	819	823	Right-handed 310
Helix 3	AA3	A	836	840	Right-handed 310
Helix 4	AA4	A	852	856	Right-handed 310
Helix 5	AA5	A	864	873	Right-handed alpha
Helix 6	AA6	A	892	896	Right-handed 310
Helix 7	AA7	A	1153	1158	Right-handed alpha
Helix 8	AA8	A	1225	1228	Right-handed 310
Helix 9	AA9	A	1244	1249	Right-handed alpha
Helix 10	AB1	A	1278	1281	Right-handed 310
Helix 11	AB2	B	796	801	Right-handed alpha
Helix 12	AB3	B	808	818	Right-handed alpha
Helix 13	AB4	B	819	823	Right-handed 310
Helix 14	AB5	B	836	841	Right-handed alpha
Helix 15	AB6	B	852	856	Right-handed 310
Helix 16	AB7	B	864	873	Right-handed alpha
Helix 17	AB8	B	892	896	Right-handed 310
Helix 18	AB9	B	1153	1158	Right-handed alpha
Helix 19	AC1	B	1244	1249	Right-handed alpha
Helix 20	AC2	C	808	818	Right-handed alpha
Helix 21	AC3	C	819	823	Right-handed 310
Helix 22	AC4	C	836	841	Right-handed alpha
Helix 23	AC5	C	852	856	Right-handed 310
Helix 24	AC6	C	864	873	Right-handed alpha
Helix 25	AC7	C	892	896	Right-handed 310
Helix 26	AC8	C	1153	1158	Right-handed alpha
Helix 27	AC9	C	1244	1249	Right-handed alpha
Helix 28	AD1	C	1278	1281	Right-handed 310

There are 15 sheets in PDB entry 5NXF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	948	950	first strand
Strand 2	A	968	971	anti-parallel
Strand 3	A	983	989	anti-parallel
Strand 4	A	997	1002	anti-parallel
Strand 5	A	1007	1011	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1099	1101	first strand
Strand 2	A	1090	1093	anti-parallel
Strand 3	A	1069	1074	anti-parallel
Strand 4	A	1059	1065	anti-parallel
Strand 5	A	1050	1056	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1147	1151	first strand
Strand 2	A	1189	1194	anti-parallel
Strand 3	A	1202	1207	anti-parallel
Strand 4	A	1218	1222	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1168	1170	first strand
Strand 2	A	1177	1179	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1266	1269	first strand
Strand 2	A	1272	1277	anti-parallel
Strand 3	A	1282	1287	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	948	950	first strand
Strand 2	B	968	971	anti-parallel
Strand 3	B	985	990	anti-parallel
Strand 4	B	995	1001	anti-parallel
Strand 5	B	1007	1011	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1099	1101	first strand
Strand 2	B	1090	1093	anti-parallel
Strand 3	B	1069	1074	anti-parallel
Strand 4	B	1059	1065	anti-parallel
Strand 5	B	1050	1056	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1147	1151	first strand
Strand 2	B	1189	1194	anti-parallel
Strand 3	B	1202	1207	anti-parallel
Strand 4	B	1218	1222	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1168	1170	first strand
Strand 2	B	1177	1179	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1267	1269	first strand
Strand 2	B	1272	1277	anti-parallel
Strand 3	B	1282	1287	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	948	950	first strand
Strand 2	C	968	971	anti-parallel
Strand 3	C	985	990	anti-parallel
Strand 4	C	995	1001	anti-parallel
Strand 5	C	1007	1011	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1099	1101	first strand
Strand 2	C	1090	1093	anti-parallel
Strand 3	C	1069	1074	anti-parallel
Strand 4	C	1059	1065	anti-parallel
Strand 5	C	1050	1056	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1147	1151	first strand
Strand 2	C	1189	1194	anti-parallel
Strand 3	C	1202	1207	anti-parallel
Strand 4	C	1218	1222	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1168	1170	first strand
Strand 2	C	1177	1179	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1266	1269	first strand
Strand 2	C	1272	1277	anti-parallel
Strand 3	C	1282	1287	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NXF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NXF