Analysis of interatomic Contacts of Structural Units in PDB entry:
5NXH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NXH entry

There are 3 chains in PDB entry 5NXH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 744	GLU 1289
B	GLU 744	GLU 1289
C	GLU 744	GLU 1289

There are 33 helices in PDB entry 5NXH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	757	764	Right-handed alpha
Helix 2	AA2	A	772	779	Right-handed alpha
Helix 3	AA3	A	793	800	Right-handed alpha
Helix 4	AA4	A	808	818	Right-handed alpha
Helix 5	AA5	A	819	823	Right-handed 310
Helix 6	AA6	A	836	841	Right-handed alpha
Helix 7	AA7	A	852	856	Right-handed 310
Helix 8	AA8	A	864	873	Right-handed alpha
Helix 9	AA9	A	892	896	Right-handed 310
Helix 10	AB1	A	1153	1158	Right-handed alpha
Helix 11	AB2	A	1244	1249	Right-handed alpha
Helix 12	AB3	B	757	764	Right-handed alpha
Helix 13	AB4	B	772	779	Right-handed alpha
Helix 14	AB5	B	793	800	Right-handed alpha
Helix 15	AB6	B	808	818	Right-handed alpha
Helix 16	AB7	B	819	823	Right-handed 310
Helix 17	AB8	B	836	841	Right-handed alpha
Helix 18	AB9	B	852	856	Right-handed 310
Helix 19	AC1	B	864	873	Right-handed alpha
Helix 20	AC2	B	892	896	Right-handed 310
Helix 21	AC3	B	1153	1158	Right-handed alpha
Helix 22	AC4	B	1244	1249	Right-handed alpha
Helix 23	AC5	C	757	764	Right-handed alpha
Helix 24	AC6	C	772	779	Right-handed alpha
Helix 25	AC7	C	793	800	Right-handed alpha
Helix 26	AC8	C	808	818	Right-handed alpha
Helix 27	AC9	C	819	823	Right-handed 310
Helix 28	AD1	C	836	841	Right-handed alpha
Helix 29	AD2	C	852	856	Right-handed 310
Helix 30	AD3	C	864	873	Right-handed alpha
Helix 31	AD4	C	892	896	Right-handed 310
Helix 32	AD5	C	1153	1158	Right-handed alpha
Helix 33	AD6	C	1244	1249	Right-handed alpha

There are 15 sheets in PDB entry 5NXH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	948	952	first strand
Strand 2	A	966	971	anti-parallel
Strand 3	A	983	990	anti-parallel
Strand 4	A	997	1002	anti-parallel
Strand 5	A	1007	1011	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1099	1101	first strand
Strand 2	A	1090	1093	anti-parallel
Strand 3	A	1069	1074	anti-parallel
Strand 4	A	1059	1065	anti-parallel
Strand 5	A	1050	1056	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1147	1151	first strand
Strand 2	A	1189	1194	anti-parallel
Strand 3	A	1202	1207	anti-parallel
Strand 4	A	1218	1222	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1166	1170	first strand
Strand 2	A	1177	1181	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1267	1269	first strand
Strand 2	A	1272	1277	anti-parallel
Strand 3	A	1282	1287	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	948	952	first strand
Strand 2	B	966	971	anti-parallel
Strand 3	B	983	990	anti-parallel
Strand 4	B	997	1002	anti-parallel
Strand 5	B	1007	1011	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1099	1101	first strand
Strand 2	B	1090	1093	anti-parallel
Strand 3	B	1069	1074	anti-parallel
Strand 4	B	1059	1065	anti-parallel
Strand 5	B	1050	1056	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1147	1151	first strand
Strand 2	B	1189	1194	anti-parallel
Strand 3	B	1202	1207	anti-parallel
Strand 4	B	1218	1222	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1166	1170	first strand
Strand 2	B	1177	1181	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1266	1269	first strand
Strand 2	B	1272	1277	anti-parallel
Strand 3	B	1282	1287	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	948	952	first strand
Strand 2	C	966	971	anti-parallel
Strand 3	C	983	990	anti-parallel
Strand 4	C	997	1002	anti-parallel
Strand 5	C	1007	1011	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1099	1101	first strand
Strand 2	C	1090	1093	anti-parallel
Strand 3	C	1069	1074	anti-parallel
Strand 4	C	1059	1065	anti-parallel
Strand 5	C	1050	1056	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1147	1151	first strand
Strand 2	C	1189	1194	anti-parallel
Strand 3	C	1202	1207	anti-parallel
Strand 4	C	1218	1222	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1166	1170	first strand
Strand 2	C	1177	1181	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1267	1269	first strand
Strand 2	C	1272	1277	anti-parallel
Strand 3	C	1282	1287	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NXH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NXH