Analysis of interatomic Contacts of Structural Units in PDB entry:
5NXX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NXX entry

There are 2 chains in PDB entry 5NXX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ALA 8LYS 272
D
 ALA 8LYS 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5NXX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
9 15Right-handed alpha
Helix 2
AA2
C
25 38Right-handed alpha
Helix 3
AA3
C
49 63Right-handed alpha
Helix 4
AA4
C
76 81Right-handed alpha
Helix 5
AA5
C
106 111Right-handed alpha
Helix 6
AA6
C
111 121Right-handed alpha
Helix 7
AA7
C
124 137Right-handed alpha
Helix 8
AA8
C
140 152Right-handed alpha
Helix 9
AA9
C
152 160Right-handed alpha
Helix 10
AB1
C
178 195Right-handed alpha
Helix 11
AB2
C
205 216Right-handed alpha
Helix 12
AB3
C
230 237Right-handed alpha
Helix 13
AB4
C
266 272Right-handed 310
Helix 14
AB5
D
9 14Right-handed alpha
Helix 15
AB6
D
25 38Right-handed alpha
Helix 16
AB7
D
49 63Right-handed alpha
Helix 17
AB8
D
76 81Right-handed alpha
Helix 18
AB9
D
106 111Right-handed alpha
Helix 19
AC1
D
111 121Right-handed alpha
Helix 20
AC2
D
124 137Right-handed alpha
Helix 21
AC3
D
140 152Right-handed alpha
Helix 22
AC4
D
152 160Right-handed alpha
Helix 23
AC5
D
178 194Right-handed alpha
Helix 24
AC6
D
205 215Right-handed alpha
Helix 25
AC7
D
230 237Right-handed alpha
Helix 26
AC8
D
266 271Right-handed 310
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There are 6 sheets in PDB entry 5NXX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 19first strand
Strand 2
C
44 46parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 73first strand
Strand 2
C
241 258anti-parallel
Strand 3
C
83 85anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 73first strand
Strand 2
C
241 258anti-parallel
Strand 3
C
97 104anti-parallel
Strand 4
C
220 226anti-parallel
Strand 5
C
170 175parallel
Strand 6
C
198 203parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 19first strand
Strand 2
D
44 46parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 73first strand
Strand 2
D
241 258anti-parallel
Strand 3
D
83 85anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 73first strand
Strand 2
D
241 258anti-parallel
Strand 3
D
97 104anti-parallel
Strand 4
D
220 226anti-parallel
Strand 5
D
170 175parallel
Strand 6
D
198 203parallel
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