Analysis of interatomic Contacts of Structural Units in PDB entry:
5NXY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NXY entry

There are 2 chains in PDB entry 5NXY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4GLU 275
C
 GLN 4GLU 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5NXY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 31Right-handed alpha
Helix 2
AA2
A
43 54Right-handed alpha
Helix 3
AA3
A
64 70Right-handed alpha
Helix 4
AA4
A
79 96Right-handed alpha
Helix 5
AA5
A
115 122Right-handed alpha
Helix 6
AA6
A
126 135Right-handed 310
Helix 7
AA7
A
151 159Right-handed alpha
Helix 8
AA8
A
170 172Right-handed 310
Helix 9
AA9
A
173 180Right-handed alpha
Helix 10
AB1
A
193 198Right-handed alpha
Helix 11
AB2
A
221 227Right-handed alpha
Helix 12
AB3
A
229 236Right-handed alpha
Helix 13
AB4
A
242 255Right-handed alpha
Helix 14
AB5
A
259 271Right-handed alpha
Helix 15
AB6
A
272 275Right-handed 310
Helix 16
AB7
C
13 31Right-handed alpha
Helix 17
AB8
C
49 53Right-handed alpha
Helix 18
AB9
C
64 70Right-handed alpha
Helix 19
AC1
C
79 96Right-handed alpha
Helix 20
AC2
C
114 121Right-handed alpha
Helix 21
AC3
C
126 130Right-handed 310
Helix 22
AC4
C
132 135Right-handed 310
Helix 23
AC5
C
143 147Right-handed 310
Helix 24
AC6
C
151 158Right-handed alpha
Helix 25
AC7
C
170 172Right-handed 310
Helix 26
AC8
C
173 180Right-handed alpha
Helix 27
AC9
C
192 198Right-handed alpha
Helix 28
AD1
C
221 227Right-handed alpha
Helix 29
AD2
C
229 236Right-handed alpha
Helix 30
AD3
C
242 255Right-handed alpha
Helix 31
AD4
C
259 271Right-handed alpha
Helix 32
AD5
C
272 275Right-handed 310
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There are 4 sheets in PDB entry 5NXY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 41first strand
Strand 2
A
6 11parallel
Strand 3
A
58 63parallel
Strand 4
A
215 220anti-parallel
Strand 5
A
97 99anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 168first strand
Strand 2
A
137 140parallel
Strand 3
A
185 189parallel
Strand 4
A
109 114anti-parallel
Strand 5
A
200 202anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 41first strand
Strand 2
C
5 11parallel
Strand 3
C
58 63parallel
Strand 4
C
215 220anti-parallel
Strand 5
C
97 99anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
165 168first strand
Strand 2
C
137 140parallel
Strand 3
C
185 189parallel
Strand 4
C
109 113anti-parallel
Strand 5
C
201 202anti-parallel
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