Analysis of interatomic Contacts of Structural Units in PDB entry:
5NY0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NY0 entry

There is 1 chain in PDB entry 5NY0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 256TYR 623
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 5NY0. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
266 276Right-handed alpha
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There are 5 sheets in PDB entry 5NY0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
281 284parallel
Strand 3
A
301 314parallel
Strand 4
A
330 342parallel
Strand 5
A
356 368parallel
Strand 6
A
381 393parallel
Strand 7
A
432 435parallel
Strand 8
A
464 469parallel
Strand 9
A
494 499parallel
Strand 10
A
524 529parallel
Strand 11
A
552 557parallel
Strand 12
A
600 603parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 290first strand
Strand 2
A
301 314parallel
Strand 3
A
330 342parallel
Strand 4
A
356 368parallel
Strand 5
A
381 393parallel
Strand 6
A
440 445parallel
Strand 7
A
474 478parallel
Strand 8
A
504 509parallel
Strand 9
A
534 539parallel
Strand 10
A
560 565parallel
Strand 11
A
608 613parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
321 324parallel
Strand 3
A
349 352parallel
Strand 4
A
372 374parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 399first strand
Strand 2
A
402 405anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 428first strand
Strand 2
A
450 456parallel
Strand 3
A
485 491parallel
Strand 4
A
512 516parallel
Strand 5
A
545 547parallel
Strand 6
A
590 594parallel
Strand 7
A
618 622parallel
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