Analysis of interatomic Contacts of Structural Units in PDB entry:
5NY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NY5 entry

There are 2 chains in PDB entry 5NY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3PHE 491
B
 PRO 4PHE 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5NY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 17Right-handed alpha
Helix 2
AA2
A
33 43Right-handed alpha
Helix 3
AA3
A
78 85Right-handed alpha
Helix 4
AA4
A
89 91Right-handed 310
Helix 5
AA5
A
92 102Right-handed alpha
Helix 6
AA6
A
111 119Right-handed 310
Helix 7
AA7
A
130 135Right-handed alpha
Helix 8
AA8
A
188 200Right-handed alpha
Helix 9
AA9
A
213 220Right-handed alpha
Helix 10
AB1
A
233 242Right-handed alpha
Helix 11
AB2
A
323 347Right-handed alpha
Helix 12
AB3
A
358 361Right-handed 310
Helix 13
AB4
A
374 378Right-handed 310
Helix 14
AB5
A
379 392Right-handed alpha
Helix 15
AB6
A
409 420Right-handed alpha
Helix 16
AB7
A
466 473Right-handed 310
Helix 17
AB8
A
483 491Right-handed 310
Helix 18
AB9
B
7 17Right-handed alpha
Helix 19
AC1
B
33 43Right-handed alpha
Helix 20
AC2
B
78 87Right-handed alpha
Helix 21
AC3
B
89 91Right-handed 310
Helix 22
AC4
B
92 103Right-handed alpha
Helix 23
AC5
B
111 119Right-handed 310
Helix 24
AC6
B
130 135Right-handed alpha
Helix 25
AC7
B
188 200Right-handed alpha
Helix 26
AC8
B
213 221Right-handed alpha
Helix 27
AC9
B
233 242Right-handed alpha
Helix 28
AD1
B
323 347Right-handed alpha
Helix 29
AD2
B
358 361Right-handed 310
Helix 30
AD3
B
374 378Right-handed 310
Helix 31
AD4
B
379 392Right-handed alpha
Helix 32
AD5
B
409 420Right-handed alpha
Helix 33
AD6
B
466 473Right-handed 310
Helix 34
AD7
B
487 491Right-handed 310
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There are 10 sheets in PDB entry 5NY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 25first strand
Strand 2
A
57 60parallel
Strand 3
A
70 73anti-parallel
Strand 4
A
316 319parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
246 249parallel
Strand 3
A
256 258anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 123first strand
Strand 2
A
303 311anti-parallel
Strand 3
A
263 269anti-parallel
Strand 4
A
204 210anti-parallel
Strand 5
A
148 157anti-parallel
Strand 6
A
165 174anti-parallel
Strand 7
A
179 182anti-parallel
Strand 8
A
303 311anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 288first strand
Strand 2
A
294 296anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 356first strand
Strand 2
A
365 370anti-parallel
Strand 3
A
397 401parallel
Strand 4
A
455 462parallel
Strand 5
A
427 434anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
57 60parallel
Strand 3
B
70 73anti-parallel
Strand 4
B
316 318parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 109first strand
Strand 2
B
246 249parallel
Strand 3
B
256 258anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 123first strand
Strand 2
B
301 311anti-parallel
Strand 3
B
263 275anti-parallel
Strand 4
B
204 210anti-parallel
Strand 5
B
148 157anti-parallel
Strand 6
B
165 176anti-parallel
Strand 7
B
179 182anti-parallel
Strand 8
B
301 311anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 288first strand
Strand 2
B
294 296anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 356first strand
Strand 2
B
365 370anti-parallel
Strand 3
B
397 402parallel
Strand 4
B
455 462parallel
Strand 5
B
427 434anti-parallel
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