Analysis of interatomic Contacts of Structural Units in PDB entry:
5NYG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NYG entry

There are 6 chains in PDB entry 5NYG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 0	VAL 243
B	GLY 0	VAL 243
C	GLY 0	VAL 243
D	GLY 0	VAL 243
E	GLY 0	GLU 240
F	GLY 0	PHE 118

There are 40 helices in PDB entry 5NYG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	68	Right-handed alpha
Helix 2	AA2	A	82	100	Right-handed alpha
Helix 3	AA3	A	156	164	Right-handed alpha
Helix 4	AA4	A	169	188	Right-handed alpha
Helix 5	AA5	A	217	238	Right-handed alpha
Helix 6	AA6	B	51	68	Right-handed alpha
Helix 7	AA7	B	82	102	Right-handed alpha
Helix 8	AA8	B	156	164	Right-handed alpha
Helix 9	AA9	B	169	188	Right-handed alpha
Helix 10	AB1	B	217	238	Right-handed alpha
Helix 11	AB2	C	51	68	Right-handed alpha
Helix 12	AB3	C	82	101	Right-handed alpha
Helix 13	AB4	C	156	164	Right-handed alpha
Helix 14	AB5	C	169	188	Right-handed alpha
Helix 15	AB6	C	217	237	Right-handed alpha
Helix 16	AB7	D	51	68	Right-handed alpha
Helix 17	AB8	D	82	100	Right-handed alpha
Helix 18	AB9	D	156	164	Right-handed alpha
Helix 19	AC1	D	169	188	Right-handed alpha
Helix 20	AC2	D	217	238	Right-handed alpha
Helix 21	AC3	E	51	68	Right-handed alpha
Helix 22	AC4	E	82	101	Right-handed alpha
Helix 23	AC5	E	156	164	Right-handed alpha
Helix 24	AC6	E	169	188	Right-handed alpha
Helix 25	AC7	E	217	240	Right-handed alpha
Helix 26	AC8	F	51	68	Right-handed alpha
Helix 27	AC9	F	82	101	Right-handed alpha
Helix 28	AD1	F	156	164	Right-handed alpha
Helix 29	AD2	F	169	188	Right-handed alpha
Helix 30	AD3	F	217	238	Right-handed alpha
Helix 31	AD4	G	51	68	Right-handed alpha
Helix 32	AD5	G	82	100	Right-handed alpha
Helix 33	AD6	G	156	164	Right-handed alpha
Helix 34	AD7	G	169	188	Right-handed alpha
Helix 35	AD8	G	217	238	Right-handed alpha
Helix 36	AD9	H	51	68	Right-handed alpha
Helix 37	AE1	H	82	100	Right-handed alpha
Helix 38	AE2	H	156	164	Right-handed alpha
Helix 39	AE3	H	169	188	Right-handed alpha
Helix 40	AE4	H	217	237	Right-handed alpha

There are 24 sheets in PDB entry 5NYG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	151	first strand
Strand 2	A	2	7	anti-parallel
Strand 3	A	11	17	anti-parallel
Strand 4	A	195	201	anti-parallel
Strand 5	A	210	213	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	27	29	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	38	first strand
Strand 2	A	42	49	anti-parallel
Strand 3	A	115	122	anti-parallel
Strand 4	A	128	132	anti-parallel
Strand 5	A	138	140	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	151	first strand
Strand 2	B	2	7	anti-parallel
Strand 3	B	11	17	anti-parallel
Strand 4	B	195	201	anti-parallel
Strand 5	B	210	213	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	21	first strand
Strand 2	B	27	29	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	38	first strand
Strand 2	B	42	49	anti-parallel
Strand 3	B	115	122	anti-parallel
Strand 4	B	128	132	anti-parallel
Strand 5	B	138	140	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	151	first strand
Strand 2	C	2	7	anti-parallel
Strand 3	C	11	17	anti-parallel
Strand 4	C	195	201	anti-parallel
Strand 5	C	209	213	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	21	first strand
Strand 2	C	27	29	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	38	first strand
Strand 2	C	42	49	anti-parallel
Strand 3	C	115	122	anti-parallel
Strand 4	C	128	132	anti-parallel
Strand 5	C	138	140	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	151	first strand
Strand 2	D	2	7	anti-parallel
Strand 3	D	11	16	anti-parallel
Strand 4	D	195	201	anti-parallel
Strand 5	D	210	213	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	21	first strand
Strand 2	D	27	29	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	38	first strand
Strand 2	D	42	49	anti-parallel
Strand 3	D	115	122	anti-parallel
Strand 4	D	128	132	anti-parallel
Strand 5	D	138	140	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	151	first strand
Strand 2	E	2	7	anti-parallel
Strand 3	E	11	17	anti-parallel
Strand 4	E	195	201	anti-parallel
Strand 5	E	210	213	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	21	first strand
Strand 2	E	27	29	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	38	first strand
Strand 2	E	42	49	anti-parallel
Strand 3	E	115	122	anti-parallel
Strand 4	E	128	132	anti-parallel
Strand 5	E	138	140	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	151	first strand
Strand 2	F	2	7	anti-parallel
Strand 3	F	11	17	anti-parallel
Strand 4	F	195	201	anti-parallel
Strand 5	F	209	213	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	21	first strand
Strand 2	F	27	29	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	38	first strand
Strand 2	F	42	49	anti-parallel
Strand 3	F	115	122	anti-parallel
Strand 4	F	128	132	anti-parallel
Strand 5	F	138	140	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	147	151	first strand
Strand 2	G	2	7	anti-parallel
Strand 3	G	11	17	anti-parallel
Strand 4	G	195	201	anti-parallel
Strand 5	G	210	213	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	21	first strand
Strand 2	G	27	29	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	38	first strand
Strand 2	G	42	49	anti-parallel
Strand 3	G	115	122	anti-parallel
Strand 4	G	128	132	anti-parallel
Strand 5	G	138	140	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	147	151	first strand
Strand 2	H	2	7	anti-parallel
Strand 3	H	11	16	anti-parallel
Strand 4	H	195	201	anti-parallel
Strand 5	H	210	213	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	21	first strand
Strand 2	H	27	29	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	33	38	first strand
Strand 2	H	42	49	anti-parallel
Strand 3	H	115	122	anti-parallel
Strand 4	H	128	132	anti-parallel
Strand 5	H	138	140	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NYG

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NYG