Analysis of interatomic Contacts of Structural Units in PDB entry:
5NYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NYR entry

There are 2 chains in PDB entry 5NYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1ASP 242
B
 THR 1GLU 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5NYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 69Right-handed alpha
Helix 2
AA2
A
82 98Right-handed alpha
Helix 3
AA3
A
156 164Right-handed alpha
Helix 4
AA4
A
169 180Right-handed alpha
Helix 5
AA5
A
217 242Right-handed alpha
Helix 6
AA6
B
51 69Right-handed alpha
Helix 7
AA7
B
82 98Right-handed alpha
Helix 8
AA8
B
156 164Right-handed alpha
Helix 9
AA9
B
169 182Right-handed alpha
Helix 10
AB1
B
217 240Right-handed alpha
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There are 4 sheets in PDB entry 5NYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 151first strand
Strand 2
A
2 7anti-parallel
Strand 3
A
11 17anti-parallel
Strand 4
A
195 201anti-parallel
Strand 5
A
209 213anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 38first strand
Strand 2
A
42 48anti-parallel
Strand 3
A
116 122anti-parallel
Strand 4
A
128 132anti-parallel
Strand 5
A
138 140anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 150first strand
Strand 2
B
3 8anti-parallel
Strand 3
B
11 17anti-parallel
Strand 4
B
195 201anti-parallel
Strand 5
B
210 213anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 38first strand
Strand 2
B
42 48anti-parallel
Strand 3
B
116 122anti-parallel
Strand 4
B
128 132anti-parallel
Strand 5
B
138 140anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il