Analysis of interatomic Contacts of Structural Units in PDB entry:
5NZM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NZM entry

There is 1 chain in PDB entry 5NZM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6PRO 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5NZM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 22Right-handed alpha
Helix 2
AA2
A
25 40Right-handed alpha
Helix 3
AA3
A
48 52Right-handed 310
Helix 4
AA4
A
62 64Right-handed 310
Helix 5
AA5
A
69 74Right-handed alpha
Helix 6
AA6
A
86 90Right-handed 310
Helix 7
AA7
A
94 97Right-handed 310
Helix 8
AA8
A
106 121Right-handed alpha
Helix 9
AA9
A
135 147Right-handed alpha
Helix 10
AB1
A
147 152Right-handed alpha
Helix 11
AB2
A
192 201Right-handed alpha
Helix 12
AB3
A
202 211Right-handed alpha
Helix 13
AB4
A
228 239Right-handed alpha
Helix 14
AB5
A
250 254Right-handed 310
Helix 15
AB6
A
284 288Right-handed 310
Helix 16
AB7
A
289 291Right-handed 310
Helix 17
AB8
A
292 297Right-handed alpha
Helix 18
AB9
A
314 324Right-handed alpha
Helix 19
AC1
A
355 363Right-handed 310
Helix 20
AC2
A
372 376Right-handed 310
Helix 21
AC3
A
381 390Right-handed alpha
Helix 22
AC4
A
417 422Right-handed alpha
Helix 23
AC5
A
423 431Right-handed alpha
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There are 8 sheets in PDB entry 5NZM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
366 370parallel
Strand 3
A
242 248parallel
Strand 4
A
304 313anti-parallel
Strand 5
A
214 219anti-parallel
Strand 6
A
76 82parallel
Strand 7
A
126 131parallel
Strand 8
A
159 161parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
104 105anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
186 187anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
348 353anti-parallel
Strand 3
A
333 338anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 266first strand
Strand 2
A
275 283anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 395first strand
Strand 2
A
401 403anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 416first strand
Strand 2
A
441 447parallel
Strand 3
A
457 465parallel
Strand 4
A
480 486parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 451first strand
Strand 2
A
473 474parallel
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