Analysis of interatomic Contacts of Structural Units in PDB entry:
5NZZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NZZ entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 16 chains in PDB entry 5NZZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 15	PRO 410
B	SER 11	PRO 410
C	GLN 13	PRO 410
D	GLN 13	PRO 410
E	GLU 4	MET 179
E	GLY 181	GLY 181
E	VAL 183	LEU 353
F	ARG 5	MET 179
F	GLY 181	GLY 181
F	VAL 183	LEU 353
G	ARG 5	MET 179
G	GLY 181	GLY 181
G	VAL 183	LEU 353
H	ARG 5	MET 179
H	GLY 181	GLY 181
H	VAL 183	PRO 352

There are113 helices in PDB entry 5NZZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	87	Right-handed alpha
Helix 2	AA2	A	98	133	Right-handed alpha
Helix 3	AA3	A	140	144	Right-handed 310
Helix 4	AA4	A	145	147	Right-handed 310
Helix 5	AA5	A	148	163	Right-handed alpha
Helix 6	AA6	A	211	220	Right-handed alpha
Helix 7	AA7	A	226	232	Right-handed alpha
Helix 8	AA8	A	245	250	Right-handed alpha
Helix 9	AA9	A	289	301	Right-handed alpha
Helix 10	AB1	A	304	320	Right-handed alpha
Helix 11	AB2	A	322	344	Right-handed alpha
Helix 12	AB3	A	346	352	Right-handed 310
Helix 13	AB4	B	74	85	Right-handed alpha
Helix 14	AB5	B	86	88	Right-handed 310
Helix 15	AB6	B	98	121	Right-handed alpha
Helix 16	AB7	B	121	134	Right-handed alpha
Helix 17	AB8	B	140	144	Right-handed 310
Helix 18	AB9	B	145	147	Right-handed 310
Helix 19	AC1	B	148	163	Right-handed alpha
Helix 20	AC2	B	211	221	Right-handed alpha
Helix 21	AC3	B	224	232	Right-handed alpha
Helix 22	AC4	B	245	250	Right-handed alpha
Helix 23	AC5	B	255	259	Right-handed 310
Helix 24	AC6	B	289	301	Right-handed alpha
Helix 25	AC7	B	304	320	Right-handed alpha
Helix 26	AC8	B	322	344	Right-handed alpha
Helix 27	AC9	B	347	352	Right-handed 310
Helix 28	AD1	C	74	89	Right-handed alpha
Helix 29	AD2	C	98	120	Right-handed alpha
Helix 30	AD3	C	121	134	Right-handed alpha
Helix 31	AD4	C	148	163	Right-handed alpha
Helix 32	AD5	C	211	221	Right-handed alpha
Helix 33	AD6	C	224	231	Right-handed alpha
Helix 34	AD7	C	245	252	Right-handed alpha
Helix 35	AD8	C	253	255	Right-handed 310
Helix 36	AD9	C	289	301	Right-handed alpha
Helix 37	AE1	C	304	320	Right-handed alpha
Helix 38	AE2	C	322	344	Right-handed alpha
Helix 39	AE3	C	346	352	Right-handed 310
Helix 40	AE4	D	74	84	Right-handed alpha
Helix 41	AE5	D	85	88	Right-handed 310
Helix 42	AE6	D	98	121	Right-handed alpha
Helix 43	AE7	D	121	133	Right-handed alpha
Helix 44	AE8	D	145	147	Right-handed 310
Helix 45	AE9	D	148	163	Right-handed alpha
Helix 46	AF1	D	211	221	Right-handed alpha
Helix 47	AF2	D	224	232	Right-handed alpha
Helix 48	AF3	D	245	251	Right-handed alpha
Helix 49	AF4	D	289	301	Right-handed alpha
Helix 50	AF5	D	304	320	Right-handed alpha
Helix 51	AF6	D	322	345	Right-handed alpha
Helix 52	AF7	D	348	352	Right-handed 310
Helix 53	AF8	E	61	78	Right-handed alpha
Helix 54	AF9	E	113	118	Right-handed alpha
Helix 55	AG1	E	123	144	Right-handed alpha
Helix 56	AG2	E	152	154	Right-handed 310
Helix 57	AG3	E	185	189	Right-handed 310
Helix 58	AG4	E	190	196	Right-handed alpha
Helix 59	AG5	E	202	219	Right-handed alpha
Helix 60	AG6	E	227	240	Right-handed alpha
Helix 61	AG7	E	243	251	Right-handed alpha
Helix 62	AG8	E	252	262	Right-handed alpha
Helix 63	AG9	E	269	274	Right-handed alpha
Helix 64	AH1	E	278	289	Right-handed alpha
Helix 65	AH2	E	292	296	Right-handed 310
Helix 66	AH3	E	298	304	Right-handed alpha
Helix 67	AH4	E	305	309	Right-handed 310
Helix 68	AH5	E	333	347	Right-handed alpha
Helix 69	AH6	F	61	78	Right-handed alpha
Helix 70	AH7	F	113	118	Right-handed alpha
Helix 71	AH8	F	123	144	Right-handed alpha
Helix 72	AH9	F	152	154	Right-handed 310
Helix 73	AI1	F	185	189	Right-handed 310
Helix 74	AI2	F	190	196	Right-handed alpha
Helix 75	AI3	F	202	219	Right-handed alpha
Helix 76	AI4	F	227	240	Right-handed alpha
Helix 77	AI5	F	243	251	Right-handed alpha
Helix 78	AI6	F	252	261	Right-handed alpha
Helix 79	AI7	F	269	274	Right-handed alpha
Helix 80	AI8	F	278	289	Right-handed alpha
Helix 81	AI9	F	298	303	Right-handed alpha
Helix 82	AJ1	F	304	309	Right-handed 310
Helix 83	AJ2	F	313	317	Right-handed 310
Helix 84	AJ3	F	333	347	Right-handed alpha
Helix 85	AJ4	G	61	78	Right-handed alpha
Helix 86	AJ5	G	112	118	Right-handed alpha
Helix 87	AJ6	G	123	144	Right-handed alpha
Helix 88	AJ7	G	152	154	Right-handed 310
Helix 89	AJ8	G	185	189	Right-handed 310
Helix 90	AJ9	G	190	196	Right-handed alpha
Helix 91	AK1	G	203	219	Right-handed alpha
Helix 92	AK2	G	227	240	Right-handed alpha
Helix 93	AK3	G	243	251	Right-handed alpha
Helix 94	AK4	G	252	260	Right-handed alpha
Helix 95	AK5	G	269	274	Right-handed alpha
Helix 96	AK6	G	278	289	Right-handed alpha
Helix 97	AK7	G	298	304	Right-handed alpha
Helix 98	AK8	G	305	309	Right-handed 310
Helix 99	AK9	G	333	347	Right-handed alpha
Helix 100	AL1	H	61	76	Right-handed alpha
Helix 101	AL2	H	112	118	Right-handed alpha
Helix 102	AL3	H	123	143	Right-handed alpha
Helix 103	AL4	H	152	154	Right-handed 310
Helix 104	AL5	H	190	196	Right-handed alpha
Helix 105	AL6	H	202	219	Right-handed alpha
Helix 106	AL7	H	227	237	Right-handed alpha
Helix 107	AL8	H	253	262	Right-handed alpha
Helix 108	AL9	H	269	274	Right-handed alpha
Helix 109	AM1	H	278	289	Right-handed alpha
Helix 110	AM2	H	298	304	Right-handed alpha
Helix 111	AM3	H	305	311	Right-handed 310
Helix 112	AM4	H	325	330	Right-handed 310
Helix 113	AM5	H	333	346	Right-handed alpha

There are 32 sheets in PDB entry 5NZZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	32	first strand
Strand 2	A	358	364	anti-parallel
Strand 3	A	283	288	anti-parallel
Strand 4	A	187	193	anti-parallel
Strand 5	A	198	202	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	355	first strand
Strand 2	A	35	37	anti-parallel
Strand 3	A	44	46	anti-parallel
Strand 4	C	44	46	anti-parallel
Strand 5	C	35	37	anti-parallel
Strand 6	C	354	355	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	57	first strand
Strand 2	A	63	71	anti-parallel
Strand 3	A	165	174	anti-parallel
Strand 4	A	243	244	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	57	first strand
Strand 2	A	63	71	anti-parallel
Strand 3	A	165	174	anti-parallel
Strand 4	A	177	183	anti-parallel
Strand 5	A	271	277	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	32	first strand
Strand 2	B	358	364	anti-parallel
Strand 3	B	283	288	anti-parallel
Strand 4	B	187	193	anti-parallel
Strand 5	B	198	202	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	35	37	anti-parallel
Strand 3	B	44	46	anti-parallel
Strand 4	D	44	46	anti-parallel
Strand 5	D	35	37	anti-parallel
Strand 6	D	354	355	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	58	first strand
Strand 2	B	62	71	anti-parallel
Strand 3	B	165	174	anti-parallel
Strand 4	B	243	244	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	58	first strand
Strand 2	B	62	71	anti-parallel
Strand 3	B	165	174	anti-parallel
Strand 4	B	177	183	anti-parallel
Strand 5	B	271	277	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	32	first strand
Strand 2	C	358	364	anti-parallel
Strand 3	C	283	288	anti-parallel
Strand 4	C	187	194	anti-parallel
Strand 5	C	197	202	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	57	first strand
Strand 2	C	62	71	anti-parallel
Strand 3	C	165	174	anti-parallel
Strand 4	C	243	244	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	57	first strand
Strand 2	C	62	71	anti-parallel
Strand 3	C	165	174	anti-parallel
Strand 4	C	177	183	anti-parallel
Strand 5	C	271	277	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	32	first strand
Strand 2	D	358	364	anti-parallel
Strand 3	D	283	288	anti-parallel
Strand 4	D	187	194	anti-parallel
Strand 5	D	197	202	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	57	first strand
Strand 2	D	62	71	anti-parallel
Strand 3	D	165	174	anti-parallel
Strand 4	D	243	244	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	57	first strand
Strand 2	D	62	71	anti-parallel
Strand 3	D	165	174	anti-parallel
Strand 4	D	177	183	anti-parallel
Strand 5	D	271	277	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	13	first strand
Strand 2	E	16	21	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	29	first strand
Strand 2	E	38	43	anti-parallel
Strand 3	E	49	54	anti-parallel
Strand 4	E	103	107	anti-parallel
Strand 5	E	88	90	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	111	112	first strand
Strand 2	E	156	158	anti-parallel
Strand 3	E	164	166	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	147	first strand
Strand 2	E	173	174	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	9	first strand
Strand 2	F	20	21	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	13	first strand
Strand 2	F	16	17	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	29	first strand
Strand 2	F	38	43	anti-parallel
Strand 3	F	49	54	anti-parallel
Strand 4	F	103	107	anti-parallel
Strand 5	F	88	90	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	111	112	first strand
Strand 2	F	156	158	anti-parallel
Strand 3	F	164	166	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	147	first strand
Strand 2	F	173	174	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	9	first strand
Strand 2	G	20	21	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	13	first strand
Strand 2	G	16	17	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	24	29	first strand
Strand 2	G	38	43	anti-parallel
Strand 3	G	49	54	anti-parallel
Strand 4	G	103	107	anti-parallel
Strand 5	G	86	90	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	146	147	first strand
Strand 2	G	173	174	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	156	158	first strand
Strand 2	G	164	166	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	13	first strand
Strand 2	H	16	21	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	42	first strand
Strand 2	H	49	54	anti-parallel
Strand 3	H	103	107	anti-parallel
Strand 4	H	88	90	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	147	first strand
Strand 2	H	173	174	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	158	first strand
Strand 2	H	164	166	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NZZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NZZ