Analysis of interatomic Contacts of Structural Units in PDB entry:
5O02


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O02 entry

There are 2 chains in PDB entry 5O02 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 225MET 528
C
 GLN 1SER 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 5O02. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
233 237Right-handed 310
Helix 2
AA2
A
279 283Right-handed 310
Helix 3
AA3
A
407 411Right-handed 310
Helix 4
AA4
A
452 463Right-handed alpha
Helix 5
AA5
C
28 30Right-handed 310
Helix 6
AA6
C
62 65Right-handed 310
Helix 7
AA7
C
87 91Right-handed 310
Helix 8
AA8
C
105 109Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 5O02. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 449first strand
Strand 2
A
427 435anti-parallel
Strand 3
A
248 251anti-parallel
Strand 4
A
503 504anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 449first strand
Strand 2
A
427 435anti-parallel
Strand 3
A
494 498anti-parallel
Strand 4
A
483 490anti-parallel
Strand 5
A
470 476anti-parallel
Strand 6
A
512 519anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 356first strand
Strand 2
A
330 338anti-parallel
Strand 3
A
382 391anti-parallel
Strand 4
A
286 293anti-parallel
Strand 5
A
300 305anti-parallel
Strand 6
A
368 371anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
118 122parallel
Strand 3
C
92 100anti-parallel
Strand 4
C
32 39anti-parallel
Strand 5
C
46 51anti-parallel
Strand 6
C
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
118 122parallel
Strand 3
C
92 100anti-parallel
Strand 4
C
113 114anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il