Analysis of interatomic Contacts of Structural Units in PDB entry:
5O04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O04 entry

There are 6 chains in PDB entry 5O04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 226	MET 538
B	SER 224	MET 538
E	GLN 1	SER 114
D	GLN 1	SER 119
F	GLN 1	VAL 111
C	GLN 1	HIS 123

There are 20 helices in PDB entry 5O04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	233	237	Right-handed 310
Helix 2	AA2	A	279	283	Right-handed 310
Helix 3	AA3	A	370	373	Right-handed 310
Helix 4	AA4	A	403	407	Right-handed 310
Helix 5	AA5	A	417	421	Right-handed 310
Helix 6	AA6	A	462	473	Right-handed alpha
Helix 7	AA7	B	233	237	Right-handed 310
Helix 8	AA8	B	279	283	Right-handed 310
Helix 9	AA9	B	346	350	Right-handed 310
Helix 10	AB1	B	370	373	Right-handed 310
Helix 11	AB2	B	403	407	Right-handed 310
Helix 12	AB3	B	462	473	Right-handed alpha
Helix 13	AB4	E	28	32	Right-handed 310
Helix 14	AB5	E	61	64	Right-handed 310
Helix 15	AB6	E	86	90	Right-handed 310
Helix 16	AB7	D	86	90	Right-handed 310
Helix 17	AB8	F	28	32	Right-handed 310
Helix 18	AB9	F	61	64	Right-handed 310
Helix 19	AC1	F	86	90	Right-handed 310
Helix 20	AC2	C	86	90	Right-handed 310

There are 17 sheets in PDB entry 5O04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	459	first strand
Strand 2	A	437	445	anti-parallel
Strand 3	A	248	251	anti-parallel
Strand 4	A	513	514	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	459	first strand
Strand 2	A	437	445	anti-parallel
Strand 3	A	504	508	anti-parallel
Strand 4	A	493	500	anti-parallel
Strand 5	A	480	486	anti-parallel
Strand 6	A	522	529	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	452	first strand
Strand 2	A	354	363	anti-parallel
Strand 3	A	375	380	anti-parallel
Strand 4	A	301	307	anti-parallel
Strand 5	A	286	294	anti-parallel
Strand 6	A	391	399	anti-parallel
Strand 7	A	333	341	anti-parallel
Strand 8	A	354	363	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	452	first strand
Strand 2	B	354	363	anti-parallel
Strand 3	B	375	380	anti-parallel
Strand 4	B	301	307	anti-parallel
Strand 5	B	286	294	anti-parallel
Strand 6	B	391	399	anti-parallel
Strand 7	B	333	341	anti-parallel
Strand 8	B	354	363	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	459	first strand
Strand 2	B	437	445	anti-parallel
Strand 3	B	248	251	anti-parallel
Strand 4	B	513	514	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	459	first strand
Strand 2	B	437	445	anti-parallel
Strand 3	B	504	508	anti-parallel
Strand 4	B	493	500	anti-parallel
Strand 5	B	480	486	anti-parallel
Strand 6	B	522	529	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	7	first strand
Strand 2	E	18	23	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	109	113	parallel
Strand 3	E	91	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	109	113	parallel
Strand 3	E	91	99	anti-parallel
Strand 4	E	102	105	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	7	first strand
Strand 2	D	18	26	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	114	118	parallel
Strand 3	D	91	100	anti-parallel
Strand 4	D	31	39	anti-parallel
Strand 5	D	46	52	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	114	118	parallel
Strand 3	D	91	100	anti-parallel
Strand 4	D	107	110	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	7	first strand
Strand 2	F	18	23	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	59	first strand
Strand 2	F	47	51	anti-parallel
Strand 3	F	33	37	anti-parallel
Strand 4	F	94	99	anti-parallel
Strand 5	F	102	105	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	7	first strand
Strand 2	C	18	26	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	114	118	parallel
Strand 3	C	91	100	anti-parallel
Strand 4	C	31	39	anti-parallel
Strand 5	C	46	52	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	114	118	parallel
Strand 3	C	91	100	anti-parallel
Strand 4	C	107	110	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O04

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O04