Analysis of interatomic Contacts of Structural Units in PDB entry:
5O0I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O0I entry

There is 1 chain in PDB entry 5O0I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 4HIS 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5O0I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 22Right-handed alpha
Helix 2
AA2
A
23 25Right-handed 310
Helix 3
AA3
A
43 55Right-handed alpha
Helix 4
AA4
A
55 65Right-handed alpha
Helix 5
AA5
A
72 87Right-handed alpha
Helix 6
AA6
A
96 107Right-handed alpha
Helix 7
AA7
A
115 125Right-handed alpha
Helix 8
AA8
A
140 146Right-handed alpha
Helix 9
AA9
A
166 170Right-handed 310
Helix 10
AB1
A
208 212Right-handed 310
Helix 11
AB2
A
215 221Right-handed alpha
Helix 12
AB3
A
221 227Right-handed alpha
Helix 13
AB4
A
245 263Right-handed alpha
Helix 14
AB5
A
275 286Right-handed alpha
Helix 15
AB6
A
287 289Right-handed 310
Helix 16
AB7
A
295 306Right-handed alpha
Helix 17
AB8
A
308 318Right-handed alpha
Helix 18
AB9
A
322 338Right-handed alpha
Helix 19
AC1
A
358 379Right-handed alpha
Helix 20
AC2
A
383 393Right-handed 310
Helix 21
AC3
A
396 410Right-handed alpha
Helix 22
AC4
A
440 457Right-handed alpha
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There are 3 sheets in PDB entry 5O0I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 165first strand
Strand 2
A
152 157anti-parallel
Strand 3
A
132 134parallel
Strand 4
A
28 31parallel
Strand 5
A
231 234parallel
Strand 6
A
265 269parallel
Strand 7
A
291 294parallel
Strand 8
A
341 345parallel
Strand 9
A
349 354anti-parallel
Strand 10
A
422 428anti-parallel
Strand 11
A
416 419anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
199 205parallel
Strand 3
A
178 184anti-parallel
Strand 4
A
35 41parallel
Strand 5
A
110 114anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
193 194anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il