Analysis of interatomic Contacts of Structural Units in PDB entry:
5O0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O0J entry

There is 1 chain in PDB entry 5O0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5HIS 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5O0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 22Right-handed alpha
Helix 2
AA2
A
23 25Right-handed 310
Helix 3
AA3
A
43 55Right-handed alpha
Helix 4
AA4
A
55 65Right-handed alpha
Helix 5
AA5
A
72 87Right-handed alpha
Helix 6
AA6
A
96 107Right-handed alpha
Helix 7
AA7
A
115 125Right-handed alpha
Helix 8
AA8
A
140 146Right-handed alpha
Helix 9
AA9
A
208 212Right-handed 310
Helix 10
AB1
A
215 227Right-handed alpha
Helix 11
AB2
A
245 263Right-handed alpha
Helix 12
AB3
A
275 286Right-handed alpha
Helix 13
AB4
A
287 289Right-handed 310
Helix 14
AB5
A
295 306Right-handed alpha
Helix 15
AB6
A
308 317Right-handed alpha
Helix 16
AB7
A
322 338Right-handed alpha
Helix 17
AB8
A
358 379Right-handed alpha
Helix 18
AB9
A
384 390Right-handed alpha
Helix 19
AC1
A
391 393Right-handed 310
Helix 20
AC2
A
396 410Right-handed alpha
Helix 21
AC3
A
440 457Right-handed alpha
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There are 3 sheets in PDB entry 5O0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 165first strand
Strand 2
A
152 158anti-parallel
Strand 3
A
132 134parallel
Strand 4
A
28 31parallel
Strand 5
A
231 234parallel
Strand 6
A
265 269parallel
Strand 7
A
291 294parallel
Strand 8
A
341 346parallel
Strand 9
A
349 354anti-parallel
Strand 10
A
422 428anti-parallel
Strand 11
A
416 419anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
199 204parallel
Strand 3
A
178 184anti-parallel
Strand 4
A
35 41parallel
Strand 5
A
110 114anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
193 194anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il