Analysis of interatomic Contacts of Structural Units in PDB entry:
5O0O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O0O entry

There are 5 chains in PDB entry 5O0O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 25	HIS 342
B	PRO 26	HIS 342
C	PRO 26	HIS 342
D	SER 25	HIS 341
E	GLY 24	THR 41

There are 67 helices in PDB entry 5O0O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	242	247	Right-handed alpha
Helix 2	AA2	A	265	267	Right-handed 310
Helix 3	AA3	A	268	278	Right-handed alpha
Helix 4	AA4	A	290	294	Right-handed 310
Helix 5	AA5	A	297	301	Right-handed 310
Helix 6	AA6	A	302	306	Right-handed 310
Helix 7	AA7	A	320	324	Right-handed 310
Helix 8	AA8	A	325	330	Right-handed alpha
Helix 9	AA9	A	333	341	Right-handed alpha
Helix 10	AB1	B	242	246	Right-handed 310
Helix 11	AB2	B	265	267	Right-handed 310
Helix 12	AB3	B	268	278	Right-handed alpha
Helix 13	AB4	B	290	294	Right-handed 310
Helix 14	AB5	B	297	301	Right-handed 310
Helix 15	AB6	B	302	306	Right-handed 310
Helix 16	AB7	B	320	324	Right-handed 310
Helix 17	AB8	B	325	330	Right-handed alpha
Helix 18	AB9	B	333	342	Right-handed alpha
Helix 19	AC1	C	242	247	Right-handed alpha
Helix 20	AC2	C	265	267	Right-handed 310
Helix 21	AC3	C	268	278	Right-handed alpha
Helix 22	AC4	C	290	294	Right-handed 310
Helix 23	AC5	C	297	301	Right-handed 310
Helix 24	AC6	C	302	306	Right-handed 310
Helix 25	AC7	C	325	330	Right-handed alpha
Helix 26	AC8	C	333	342	Right-handed alpha
Helix 27	AC9	D	242	247	Right-handed alpha
Helix 28	AD1	D	265	267	Right-handed 310
Helix 29	AD2	D	268	278	Right-handed alpha
Helix 30	AD3	D	290	294	Right-handed 310
Helix 31	AD4	D	297	301	Right-handed 310
Helix 32	AD5	D	302	306	Right-handed 310
Helix 33	AD6	D	325	330	Right-handed alpha
Helix 34	AD7	D	333	339	Right-handed alpha
Helix 35	AD8	E	242	247	Right-handed alpha
Helix 36	AD9	E	265	267	Right-handed 310
Helix 37	AE1	E	268	278	Right-handed alpha
Helix 38	AE2	E	290	294	Right-handed 310
Helix 39	AE3	E	297	301	Right-handed 310
Helix 40	AE4	E	302	306	Right-handed 310
Helix 41	AE5	E	320	324	Right-handed 310
Helix 42	AE6	E	325	331	Right-handed alpha
Helix 43	AE7	E	333	339	Right-handed alpha
Helix 44	AE8	F	242	246	Right-handed 310
Helix 45	AE9	F	265	267	Right-handed 310
Helix 46	AF1	F	268	278	Right-handed alpha
Helix 47	AF2	F	290	294	Right-handed 310
Helix 48	AF3	F	297	301	Right-handed 310
Helix 49	AF4	F	302	306	Right-handed 310
Helix 50	AF5	F	325	330	Right-handed alpha
Helix 51	AF6	F	333	341	Right-handed alpha
Helix 52	AF7	G	242	246	Right-handed 310
Helix 53	AF8	G	265	267	Right-handed 310
Helix 54	AF9	G	268	278	Right-handed alpha
Helix 55	AG1	G	290	294	Right-handed 310
Helix 56	AG2	G	297	301	Right-handed 310
Helix 57	AG3	G	302	306	Right-handed 310
Helix 58	AG4	G	325	330	Right-handed alpha
Helix 59	AG5	G	333	341	Right-handed alpha
Helix 60	AG6	H	242	246	Right-handed 310
Helix 61	AG7	H	265	267	Right-handed 310
Helix 62	AG8	H	268	278	Right-handed alpha
Helix 63	AG9	H	290	294	Right-handed 310
Helix 64	AH1	H	297	301	Right-handed 310
Helix 65	AH2	H	302	306	Right-handed 310
Helix 66	AH3	H	325	330	Right-handed alpha
Helix 67	AH4	H	333	341	Right-handed alpha

There are 27 sheets in PDB entry 5O0O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	40	42	anti-parallel
Strand 3	A	61	63	parallel
Strand 4	A	85	87	parallel
Strand 5	A	109	111	parallel
Strand 6	A	134	136	parallel
Strand 7	A	158	160	parallel
Strand 8	A	182	184	parallel
Strand 9	A	206	208	parallel
Strand 10	A	230	232	parallel
Strand 11	A	254	256	parallel
Strand 12	A	281	282	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	95	96	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	287	289	parallel

Back to list of sheets
Back to top of page

There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	B	40	42	anti-parallel
Strand 3	B	61	63	parallel
Strand 4	B	85	87	parallel
Strand 5	B	109	111	parallel
Strand 6	B	134	136	parallel
Strand 7	B	158	160	parallel
Strand 8	B	182	184	parallel
Strand 9	B	206	208	parallel
Strand 10	B	230	232	parallel
Strand 11	B	254	256	parallel
Strand 12	B	281	282	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	95	96	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	193	first strand
Strand 2	B	216	217	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	263	first strand
Strand 2	B	287	289	parallel

Back to list of sheets
Back to top of page

There are 12 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	34	first strand
Strand 2	C	40	42	anti-parallel
Strand 3	C	61	63	parallel
Strand 4	C	85	87	parallel
Strand 5	C	109	111	parallel
Strand 6	C	134	136	parallel
Strand 7	C	158	160	parallel
Strand 8	C	182	184	parallel
Strand 9	C	206	208	parallel
Strand 10	C	230	232	parallel
Strand 11	C	254	256	parallel
Strand 12	C	281	282	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	95	96	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	193	first strand
Strand 2	C	216	217	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	263	first strand
Strand 2	C	287	289	parallel

Back to list of sheets
Back to top of page

There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	34	first strand
Strand 2	D	40	42	anti-parallel
Strand 3	D	61	63	parallel
Strand 4	D	85	87	parallel
Strand 5	D	109	111	parallel
Strand 6	D	134	136	parallel
Strand 7	D	158	160	parallel
Strand 8	D	182	184	parallel
Strand 9	D	206	208	parallel
Strand 10	D	230	232	parallel
Strand 11	D	254	256	parallel
Strand 12	D	281	282	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	95	96	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	263	first strand
Strand 2	D	287	289	parallel

Back to list of sheets
Back to top of page

There are 12 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	34	first strand
Strand 2	E	40	42	anti-parallel
Strand 3	E	61	63	parallel
Strand 4	E	85	87	parallel
Strand 5	E	109	111	parallel
Strand 6	E	134	136	parallel
Strand 7	E	158	160	parallel
Strand 8	E	182	184	parallel
Strand 9	E	206	208	parallel
Strand 10	E	230	232	parallel
Strand 11	E	254	256	parallel
Strand 12	E	281	282	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	95	96	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	262	263	first strand
Strand 2	E	287	289	parallel

Back to list of sheets
Back to top of page

There are 12 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	34	first strand
Strand 2	F	40	42	anti-parallel
Strand 3	F	61	63	parallel
Strand 4	F	85	87	parallel
Strand 5	F	109	111	parallel
Strand 6	F	134	136	parallel
Strand 7	F	158	160	parallel
Strand 8	F	182	184	parallel
Strand 9	F	206	208	parallel
Strand 10	F	230	232	parallel
Strand 11	F	254	256	parallel
Strand 12	F	281	282	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	72	first strand
Strand 2	F	95	96	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	192	193	first strand
Strand 2	F	216	217	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	262	263	first strand
Strand 2	F	287	289	parallel

Back to list of sheets
Back to top of page

There are 12 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	34	first strand
Strand 2	G	40	42	anti-parallel
Strand 3	G	61	63	parallel
Strand 4	G	85	87	parallel
Strand 5	G	109	111	parallel
Strand 6	G	134	136	parallel
Strand 7	G	158	160	parallel
Strand 8	G	182	184	parallel
Strand 9	G	206	208	parallel
Strand 10	G	230	232	parallel
Strand 11	G	254	256	parallel
Strand 12	G	281	282	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	71	72	first strand
Strand 2	G	95	96	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	262	263	first strand
Strand 2	G	287	289	parallel

Back to list of sheets
Back to top of page

There are 12 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	32	34	first strand
Strand 2	H	40	42	anti-parallel
Strand 3	H	61	63	parallel
Strand 4	H	85	87	parallel
Strand 5	H	109	111	parallel
Strand 6	H	134	136	parallel
Strand 7	H	158	160	parallel
Strand 8	H	182	184	parallel
Strand 9	H	206	208	parallel
Strand 10	H	230	232	parallel
Strand 11	H	254	256	parallel
Strand 12	H	281	282	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	72	first strand
Strand 2	H	95	96	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	262	263	first strand
Strand 2	H	287	289	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O0O

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O0O