Analysis of interatomic Contacts of Structural Units in PDB entry:
5O0Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O0Q entry

There are 4 chains in PDB entry 5O0Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 25	CYS 336
B	SER 25	CYS 336
C	SER 25	CYS 336
D	SER 25	CYS 336

There are 20 helices in PDB entry 5O0Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	242	246	Right-handed 310
Helix 2	AA2	A	265	267	Right-handed 310
Helix 3	AA3	A	268	278	Right-handed alpha
Helix 4	AA4	A	290	294	Right-handed 310
Helix 5	AA5	A	297	301	Right-handed 310
Helix 6	AA6	A	302	306	Right-handed 310
Helix 7	AA7	B	265	267	Right-handed 310
Helix 8	AA8	B	268	278	Right-handed alpha
Helix 9	AA9	B	290	294	Right-handed 310
Helix 10	AB1	B	302	306	Right-handed 310
Helix 11	AB2	C	242	246	Right-handed 310
Helix 12	AB3	C	265	267	Right-handed 310
Helix 13	AB4	C	268	278	Right-handed alpha
Helix 14	AB5	C	302	306	Right-handed 310
Helix 15	AB6	D	242	246	Right-handed 310
Helix 16	AB7	D	265	267	Right-handed 310
Helix 17	AB8	D	268	278	Right-handed alpha
Helix 18	AB9	D	290	294	Right-handed 310
Helix 19	AC1	D	297	301	Right-handed 310
Helix 20	AC2	D	302	307	Right-handed 310

There are 16 sheets in PDB entry 5O0Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	40	42	anti-parallel
Strand 3	A	61	63	parallel
Strand 4	A	85	87	parallel
Strand 5	A	109	111	parallel
Strand 6	A	134	136	parallel
Strand 7	A	158	160	parallel
Strand 8	A	182	184	parallel
Strand 9	A	206	208	parallel
Strand 10	A	230	232	parallel
Strand 11	A	254	256	parallel
Strand 12	A	281	282	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	95	96	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	193	first strand
Strand 2	A	216	217	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	287	289	parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	B	40	42	anti-parallel
Strand 3	B	61	63	parallel
Strand 4	B	85	87	parallel
Strand 5	B	109	111	parallel
Strand 6	B	134	136	parallel
Strand 7	B	158	160	parallel
Strand 8	B	182	184	parallel
Strand 9	B	206	208	parallel
Strand 10	B	230	232	parallel
Strand 11	B	254	256	parallel
Strand 12	B	281	282	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	95	96	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	193	first strand
Strand 2	B	216	217	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	263	first strand
Strand 2	B	287	289	parallel

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There are 12 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	34	first strand
Strand 2	C	40	42	anti-parallel
Strand 3	C	61	63	parallel
Strand 4	C	85	87	parallel
Strand 5	C	109	111	parallel
Strand 6	C	134	136	parallel
Strand 7	C	158	160	parallel
Strand 8	C	182	184	parallel
Strand 9	C	206	208	parallel
Strand 10	C	230	232	parallel
Strand 11	C	254	256	parallel
Strand 12	C	281	282	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	95	96	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	193	first strand
Strand 2	C	216	217	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	263	first strand
Strand 2	C	287	289	parallel

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There are 12 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	34	first strand
Strand 2	D	40	42	anti-parallel
Strand 3	D	61	63	parallel
Strand 4	D	85	87	parallel
Strand 5	D	109	111	parallel
Strand 6	D	134	136	parallel
Strand 7	D	158	160	parallel
Strand 8	D	182	184	parallel
Strand 9	D	206	208	parallel
Strand 10	D	230	232	parallel
Strand 11	D	254	256	parallel
Strand 12	D	281	282	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	95	96	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	193	first strand
Strand 2	D	216	217	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	263	first strand
Strand 2	D	287	289	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O0Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O0Q