Analysis of interatomic Contacts of Structural Units in PDB entry:
5O0S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O0S entry

There is 1 chain in PDB entry 5O0S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 31VAL 801
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5O0S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
186 190Right-handed 310
Helix 2
AA2
A
289 300Right-handed alpha
Helix 3
AA3
A
357 362Right-handed alpha
Helix 4
AA4
A
367 395Right-handed alpha
Helix 5
AA5
A
400 411Right-handed alpha
Helix 6
AA6
A
411 417Right-handed alpha
Helix 7
AA7
A
450 458Right-handed alpha
Helix 8
AA8
A
458 465Right-handed alpha
Helix 9
AA9
A
465 480Right-handed alpha
Helix 10
AB1
A
527 531Right-handed 310
Helix 11
AB2
A
533 548Right-handed alpha
Helix 12
AB3
A
553 573Right-handed alpha
Helix 13
AB4
A
601 622Right-handed alpha
Helix 14
AB5
A
624 647Right-handed alpha
Helix 15
AB6
A
669 678Right-handed alpha
Helix 16
AB7
A
685 699Right-handed alpha
Helix 17
AB8
A
704 708Right-handed 310
Helix 18
AB9
A
725 730Right-handed 310
Helix 19
AC1
A
733 746Right-handed alpha
Helix 20
AC2
A
748 765Right-handed alpha
Helix 21
AC3
A
791 801Right-handed 310
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There are 8 sheets in PDB entry 5O0S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
150 155anti-parallel
Strand 3
A
158 163anti-parallel
Strand 4
A
171 177anti-parallel
Strand 5
A
192 200anti-parallel
Strand 6
A
331 341anti-parallel
Strand 7
A
264 270anti-parallel
Strand 8
A
246 253anti-parallel
Strand 9
A
232 239anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
82 85anti-parallel
Strand 3
A
91 95anti-parallel
Strand 4
A
102 103anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
110 117anti-parallel
Strand 3
A
207 216anti-parallel
Strand 4
A
316 326anti-parallel
Strand 5
A
275 284anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 346first strand
Strand 2
A
352 355anti-parallel
Strand 3
A
420 425anti-parallel
Strand 4
A
437 438anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 489first strand
Strand 2
A
496 500anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 585first strand
Strand 2
A
598 599anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
664 665first strand
Strand 2
A
714 715anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
731 732first strand
Strand 2
A
778 779anti-parallel
Strand 3
A
785 786anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il