Analysis of interatomic Contacts of Structural Units in PDB entry:
5O15


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O15 entry

There are 2 chains in PDB entry 5O15 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 18GLY 306
B
 LYS 18GLY 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5O15. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 50Right-handed 310
Helix 2
AA2
A
60 76Right-handed alpha
Helix 3
AA3
A
145 149Right-handed 310
Helix 4
AA4
A
166 171Right-handed alpha
Helix 5
AA5
A
174 178Right-handed 310
Helix 6
AA6
A
199 207Right-handed 310
Helix 7
AA7
A
210 226Right-handed alpha
Helix 8
AA8
A
296 306Right-handed alpha
Helix 9
AA9
B
45 50Right-handed 310
Helix 10
AB1
B
60 76Right-handed alpha
Helix 11
AB2
B
145 149Right-handed 310
Helix 12
AB3
B
166 171Right-handed alpha
Helix 13
AB4
B
174 178Right-handed 310
Helix 14
AB5
B
197 202Right-handed alpha
Helix 15
AB6
B
203 207Right-handed 310
Helix 16
AB7
B
210 226Right-handed alpha
Helix 17
AB8
B
296 306Right-handed alpha
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There are 4 sheets in PDB entry 5O15. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
34 41anti-parallel
Strand 3
A
96 103anti-parallel
Strand 4
A
112 120anti-parallel
Strand 5
A
129 137anti-parallel
Strand 6
A
79 85anti-parallel
Strand 7
A
236 247anti-parallel
Strand 8
A
283 295anti-parallel
Strand 9
A
269 277anti-parallel
Strand 10
A
254 261anti-parallel
Strand 11
A
189 195anti-parallel
Strand 12
A
180 186anti-parallel
Strand 13
A
158 160anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
56 57anti-parallel
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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 27first strand
Strand 2
B
34 41anti-parallel
Strand 3
B
96 103anti-parallel
Strand 4
B
112 120anti-parallel
Strand 5
B
129 137anti-parallel
Strand 6
B
79 85anti-parallel
Strand 7
B
236 247anti-parallel
Strand 8
B
283 295anti-parallel
Strand 9
B
269 277anti-parallel
Strand 10
B
255 261anti-parallel
Strand 11
B
189 194anti-parallel
Strand 12
B
180 186anti-parallel
Strand 13
B
158 160anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
56 57anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il