Analysis of interatomic Contacts of Structural Units in PDB entry:
5O16


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O16 entry

There are 2 chains in PDB entry 5O16 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 12THR 296
B
 SER 11ARG 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5O16. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 50Right-handed 310
Helix 2
AA2
A
60 75Right-handed alpha
Helix 3
AA3
A
145 149Right-handed 310
Helix 4
AA4
A
166 171Right-handed alpha
Helix 5
AA5
A
174 178Right-handed 310
Helix 6
AA6
A
199 207Right-handed 310
Helix 7
AA7
A
210 225Right-handed alpha
Helix 8
AA8
B
45 50Right-handed 310
Helix 9
AA9
B
60 76Right-handed alpha
Helix 10
AB1
B
145 150Right-handed alpha
Helix 11
AB2
B
166 171Right-handed alpha
Helix 12
AB3
B
174 178Right-handed 310
Helix 13
AB4
B
200 206Right-handed 310
Helix 14
AB5
B
210 226Right-handed alpha
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There are 4 sheets in PDB entry 5O16. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
24 27anti-parallel
Strand 3
A
34 41anti-parallel
Strand 4
A
96 106anti-parallel
Strand 5
A
111 120anti-parallel
Strand 6
A
129 137anti-parallel
Strand 7
A
80 85anti-parallel
Strand 8
A
236 247anti-parallel
Strand 9
A
283 295anti-parallel
Strand 10
A
269 278anti-parallel
Strand 11
A
254 261anti-parallel
Strand 12
A
189 195anti-parallel
Strand 13
A
180 186anti-parallel
Strand 14
A
158 160anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
56 57anti-parallel
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There are 14 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
B
24 27anti-parallel
Strand 3
B
34 41anti-parallel
Strand 4
B
96 103anti-parallel
Strand 5
B
111 120anti-parallel
Strand 6
B
129 137anti-parallel
Strand 7
B
80 85anti-parallel
Strand 8
B
239 247anti-parallel
Strand 9
B
283 292anti-parallel
Strand 10
B
270 277anti-parallel
Strand 11
B
254 261anti-parallel
Strand 12
B
189 195anti-parallel
Strand 13
B
180 186anti-parallel
Strand 14
B
158 160anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
56 57anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il