Analysis of interatomic Contacts of Structural Units in PDB entry:
5O1O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O1O entry

There are 2 chains in PDB entry 5O1O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 481LYS 925
B
 ARG 481PRO 926
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5O1O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
491 500Right-handed alpha
Helix 2
AA2
A
513 524Right-handed alpha
Helix 3
AA3
A
536 547Right-handed alpha
Helix 4
AA4
A
555 557Right-handed 310
Helix 5
AA5
A
558 570Right-handed alpha
Helix 6
AA6
A
580 586Right-handed alpha
Helix 7
AA7
A
586 594Right-handed alpha
Helix 8
AA8
A
606 622Right-handed alpha
Helix 9
AA9
A
639 642Right-handed 310
Helix 10
AB1
A
654 660Right-handed alpha
Helix 11
AB2
A
678 686Right-handed 310
Helix 12
AB3
A
707 713Right-handed alpha
Helix 13
AB4
A
729 741Right-handed alpha
Helix 14
AB5
A
759 769Right-handed alpha
Helix 15
AB6
A
776 786Right-handed alpha
Helix 16
AB7
A
790 801Right-handed alpha
Helix 17
AB8
A
813 826Right-handed alpha
Helix 18
AB9
A
868 888Right-handed alpha
Helix 19
AC1
A
900 911Right-handed alpha
Helix 20
AC2
B
491 500Right-handed alpha
Helix 21
AC3
B
513 524Right-handed alpha
Helix 22
AC4
B
536 547Right-handed alpha
Helix 23
AC5
B
555 557Right-handed 310
Helix 24
AC6
B
558 570Right-handed alpha
Helix 25
AC7
B
580 586Right-handed alpha
Helix 26
AC8
B
586 594Right-handed alpha
Helix 27
AC9
B
606 621Right-handed alpha
Helix 28
AD1
B
639 642Right-handed 310
Helix 29
AD2
B
655 660Right-handed alpha
Helix 30
AD3
B
678 686Right-handed 310
Helix 31
AD4
B
707 713Right-handed alpha
Helix 32
AD5
B
729 741Right-handed alpha
Helix 33
AD6
B
759 768Right-handed alpha
Helix 34
AD7
B
778 786Right-handed alpha
Helix 35
AD8
B
790 801Right-handed alpha
Helix 36
AD9
B
813 826Right-handed alpha
Helix 37
AE1
B
868 888Right-handed alpha
Helix 38
AE2
B
900 911Right-handed alpha
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There are 6 sheets in PDB entry 5O1O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 530first strand
Strand 2
A
506 511parallel
Strand 3
A
482 486parallel
Strand 4
A
549 552parallel
Strand 5
A
572 575parallel
Strand 6
A
596 598parallel
Strand 7
A
894 896parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
687 689first strand
Strand 2
A
697 701anti-parallel
Strand 3
A
719 727anti-parallel
Strand 4
A
625 637parallel
Strand 5
A
834 845anti-parallel
Strand 6
A
851 861anti-parallel
Strand 7
A
917 925anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
665 668first strand
Strand 2
A
673 676anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
527 530first strand
Strand 2
B
506 511parallel
Strand 3
B
482 486parallel
Strand 4
B
549 552parallel
Strand 5
B
572 575parallel
Strand 6
B
596 598parallel
Strand 7
B
894 896parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
687 689first strand
Strand 2
B
697 701anti-parallel
Strand 3
B
719 727anti-parallel
Strand 4
B
625 637parallel
Strand 5
B
834 845anti-parallel
Strand 6
B
851 861anti-parallel
Strand 7
B
917 925anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
665 668first strand
Strand 2
B
673 676anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il