Analysis of interatomic Contacts of Structural Units in PDB entry:
5O25


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O25 entry

There are 2 chains in PDB entry 5O25 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1GLY 317
B
 GLY -2SER 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 5O25. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 11Right-handed alpha
Helix 2
AA2
A
23 40Right-handed alpha
Helix 3
AA3
A
53 57Right-handed 310
Helix 4
AA4
A
61 63Right-handed 310
Helix 5
AA5
A
83 94Right-handed 310
Helix 6
AA6
A
123 135Right-handed alpha
Helix 7
AA7
A
140 155Right-handed alpha
Helix 8
AA8
A
164 177Right-handed alpha
Helix 9
AA9
A
180 190Right-handed alpha
Helix 10
AB1
A
193 207Right-handed alpha
Helix 11
AB2
A
211 213Right-handed 310
Helix 12
AB3
A
221 228Right-handed alpha
Helix 13
AB4
A
237 243Right-handed alpha
Helix 14
AB5
A
273 281Right-handed alpha
Helix 15
AB6
A
298 317Right-handed alpha
Helix 16
AB7
B
0 11Right-handed alpha
Helix 17
AB8
B
23 40Right-handed alpha
Helix 18
AB9
B
53 57Right-handed 310
Helix 19
AC1
B
61 63Right-handed 310
Helix 20
AC2
B
83 94Right-handed 310
Helix 21
AC3
B
123 135Right-handed alpha
Helix 22
AC4
B
140 155Right-handed alpha
Helix 23
AC5
B
164 177Right-handed alpha
Helix 24
AC6
B
180 190Right-handed alpha
Helix 25
AC7
B
193 207Right-handed alpha
Helix 26
AC8
B
221 228Right-handed alpha
Helix 27
AC9
B
237 243Right-handed alpha
Helix 28
AD1
B
273 281Right-handed alpha
Helix 29
AD2
B
298 320Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5O25. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
43 47parallel
Strand 3
A
13 17parallel
Strand 4
A
75 79parallel
Strand 5
A
99 103parallel
Strand 6
A
114 117parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 210first strand
Strand 2
A
215 220anti-parallel
Strand 3
A
250 256parallel
Strand 4
A
261 268anti-parallel
Strand 5
A
289 295anti-parallel
Strand 6
A
284 286anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 66first strand
Strand 2
B
43 47parallel
Strand 3
B
13 17parallel
Strand 4
B
75 79parallel
Strand 5
B
99 103parallel
Strand 6
B
114 117parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 210first strand
Strand 2
B
215 220anti-parallel
Strand 3
B
250 256parallel
Strand 4
B
262 268anti-parallel
Strand 5
B
289 294anti-parallel
Strand 6
B
284 286anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il