Analysis of interatomic Contacts of Structural Units in PDB entry:
5O29


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O29 entry

There is 1 chain in PDB entry 5O29 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 17ARG 592
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 5O29. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 49Right-handed alpha
Helix 2
AA2
A
51 61Right-handed alpha
Helix 3
AA3
A
65 82Right-handed alpha
Helix 4
AA4
A
84 93Right-handed alpha
Helix 5
AA5
A
94 95Right-handed 310
Helix 6
AA6
A
96 100Right-handed 310
Helix 7
AA7
A
101 112Right-handed alpha
Helix 8
AA8
A
117 122Right-handed alpha
Helix 9
AA9
A
129 142Right-handed alpha
Helix 10
AB1
A
146 160Right-handed alpha
Helix 11
AB2
A
162 173Right-handed alpha
Helix 12
AB3
A
181 189Right-handed alpha
Helix 13
AB4
A
189 194Right-handed alpha
Helix 14
AB5
A
196 200Right-handed 310
Helix 15
AB6
A
202 211Right-handed alpha
Helix 16
AB7
A
212 214Right-handed 310
Helix 17
AB8
A
215 233Right-handed alpha
Helix 18
AB9
A
235 244Right-handed alpha
Helix 19
AC1
A
248 252Right-handed 310
Helix 20
AC2
A
253 267Right-handed alpha
Helix 21
AC3
A
269 279Right-handed alpha
Helix 22
AC4
A
281 286Right-handed alpha
Helix 23
AC5
A
287 301Right-handed alpha
Helix 24
AC6
A
303 316Right-handed alpha
Helix 25
AC7
A
320 330Right-handed alpha
Helix 26
AC8
A
344 352Right-handed alpha
Helix 27
AC9
A
354 371Right-handed alpha
Helix 28
AD1
A
372 388Right-handed alpha
Helix 29
AD2
A
391 405Right-handed alpha
Helix 30
AD3
A
407 417Right-handed alpha
Helix 31
AD4
A
423 428Right-handed alpha
Helix 32
AD5
A
432 443Right-handed alpha
Helix 33
AD6
A
446 459Right-handed alpha
Helix 34
AD7
A
477 489Right-handed alpha
Helix 35
AD8
A
491 496Right-handed 310
Helix 36
AD9
A
497 516Right-handed alpha
Helix 37
AE1
A
519 530Right-handed alpha
Helix 38
AE2
A
530 537Right-handed alpha
Helix 39
AE3
A
545 551Right-handed alpha
Helix 40
AE4
A
554 576Right-handed alpha
Helix 41
AE5
A
581 587Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 5O29.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
543 544first strand
Strand 2
A
588 589anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il