Analysis of interatomic Contacts of Structural Units in PDB entry:
5O2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O2J entry

There is 1 chain in PDB entry 5O2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LEU 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5O2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 38Right-handed alpha
Helix 2
AA2
A
48 58Right-handed alpha
Helix 3
AA3
A
67 78Right-handed alpha
Helix 4
AA4
A
108 113Right-handed 310
Helix 5
AA5
A
128 140Right-handed alpha
Helix 6
AA6
A
154 164Right-handed alpha
Helix 7
AA7
A
174 179Right-handed alpha
Helix 8
AA8
A
187 189Right-handed 310
Helix 9
AA9
A
212 225Right-handed alpha
Helix 10
AB1
A
228 235Right-handed alpha
Helix 11
AB2
A
244 247Right-handed 310
Helix 12
AB3
A
248 255Right-handed alpha
Helix 13
AB4
A
256 259Right-handed 310
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There are 3 sheets in PDB entry 5O2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
8 13parallel
Strand 3
A
63 65parallel
Strand 4
A
205 208anti-parallel
Strand 5
A
80 88anti-parallel
Strand 6
A
237 241anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
200 201anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 151first strand
Strand 2
A
116 119parallel
Strand 3
A
169 173parallel
Strand 4
A
96 101anti-parallel
Strand 5
A
191 196anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il