Analysis of interatomic Contacts of Structural Units in PDB entry:
5O2K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O2K entry

There are 6 chains in PDB entry 5O2K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ASP 5	ALA 263
A	ALA 2	GLU 267
B	ALA 2	ALA 263
C	ASP 5	ALA 263
E	PRO 6	ALA 263
F	LEU 9	THR 264

There are 85 helices in PDB entry 5O2K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	18	26	Right-handed alpha
Helix 2	AA2	D	26	38	Right-handed alpha
Helix 3	AA3	D	48	58	Right-handed alpha
Helix 4	AA4	D	67	78	Right-handed alpha
Helix 5	AA5	D	103	105	Right-handed 310
Helix 6	AA6	D	108	113	Right-handed 310
Helix 7	AA7	D	128	140	Right-handed alpha
Helix 8	AA8	D	154	164	Right-handed alpha
Helix 9	AA9	D	174	181	Right-handed alpha
Helix 10	AB1	D	187	189	Right-handed 310
Helix 11	AB2	D	212	225	Right-handed alpha
Helix 12	AB3	D	228	234	Right-handed alpha
Helix 13	AB4	D	244	247	Right-handed 310
Helix 14	AB5	D	248	259	Right-handed alpha
Helix 15	AB6	A	18	26	Right-handed alpha
Helix 16	AB7	A	26	38	Right-handed alpha
Helix 17	AB8	A	48	58	Right-handed alpha
Helix 18	AB9	A	67	76	Right-handed alpha
Helix 19	AC1	A	108	113	Right-handed 310
Helix 20	AC2	A	128	140	Right-handed alpha
Helix 21	AC3	A	154	165	Right-handed alpha
Helix 22	AC4	A	174	178	Right-handed alpha
Helix 23	AC5	A	187	189	Right-handed 310
Helix 24	AC6	A	212	225	Right-handed alpha
Helix 25	AC7	A	228	234	Right-handed alpha
Helix 26	AC8	A	244	247	Right-handed 310
Helix 27	AC9	A	248	259	Right-handed alpha
Helix 28	AD1	A	261	266	Right-handed 310
Helix 29	AD2	B	18	26	Right-handed alpha
Helix 30	AD3	B	26	38	Right-handed alpha
Helix 31	AD4	B	48	58	Right-handed alpha
Helix 32	AD5	B	67	77	Right-handed alpha
Helix 33	AD6	B	108	113	Right-handed 310
Helix 34	AD7	B	128	140	Right-handed alpha
Helix 35	AD8	B	154	164	Right-handed alpha
Helix 36	AD9	B	174	181	Right-handed alpha
Helix 37	AE1	B	182	184	Right-handed 310
Helix 38	AE2	B	187	189	Right-handed 310
Helix 39	AE3	B	212	225	Right-handed alpha
Helix 40	AE4	B	228	234	Right-handed alpha
Helix 41	AE5	B	244	247	Right-handed 310
Helix 42	AE6	B	248	258	Right-handed alpha
Helix 43	AE7	C	18	26	Right-handed alpha
Helix 44	AE8	C	26	38	Right-handed alpha
Helix 45	AE9	C	48	58	Right-handed alpha
Helix 46	AF1	C	67	78	Right-handed alpha
Helix 47	AF2	C	103	105	Right-handed 310
Helix 48	AF3	C	108	113	Right-handed 310
Helix 49	AF4	C	128	140	Right-handed alpha
Helix 50	AF5	C	154	164	Right-handed alpha
Helix 51	AF6	C	174	179	Right-handed alpha
Helix 52	AF7	C	187	189	Right-handed 310
Helix 53	AF8	C	212	226	Right-handed alpha
Helix 54	AF9	C	228	233	Right-handed alpha
Helix 55	AG1	C	234	236	Right-handed 310
Helix 56	AG2	C	244	247	Right-handed 310
Helix 57	AG3	C	248	259	Right-handed alpha
Helix 58	AG4	E	18	26	Right-handed alpha
Helix 59	AG5	E	26	38	Right-handed alpha
Helix 60	AG6	E	48	58	Right-handed alpha
Helix 61	AG7	E	67	78	Right-handed alpha
Helix 62	AG8	E	103	105	Right-handed 310
Helix 63	AG9	E	108	113	Right-handed 310
Helix 64	AH1	E	128	140	Right-handed alpha
Helix 65	AH2	E	154	164	Right-handed alpha
Helix 66	AH3	E	174	181	Right-handed alpha
Helix 67	AH4	E	187	189	Right-handed 310
Helix 68	AH5	E	212	225	Right-handed alpha
Helix 69	AH6	E	228	234	Right-handed alpha
Helix 70	AH7	E	244	247	Right-handed 310
Helix 71	AH8	E	248	259	Right-handed alpha
Helix 72	AH9	F	18	26	Right-handed alpha
Helix 73	AI1	F	26	38	Right-handed alpha
Helix 74	AI2	F	48	58	Right-handed alpha
Helix 75	AI3	F	67	77	Right-handed alpha
Helix 76	AI4	F	103	105	Right-handed 310
Helix 77	AI5	F	108	113	Right-handed 310
Helix 78	AI6	F	128	140	Right-handed alpha
Helix 79	AI7	F	154	164	Right-handed alpha
Helix 80	AI8	F	174	180	Right-handed alpha
Helix 81	AI9	F	187	189	Right-handed 310
Helix 82	AJ1	F	212	225	Right-handed alpha
Helix 83	AJ2	F	228	233	Right-handed alpha
Helix 84	AJ3	F	244	247	Right-handed 310
Helix 85	AJ4	F	248	259	Right-handed alpha

There are 18 sheets in PDB entry 5O2K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	44	first strand
Strand 2	D	8	12	parallel
Strand 3	D	63	65	parallel
Strand 4	D	204	208	anti-parallel
Strand 5	D	80	87	anti-parallel
Strand 6	D	239	241	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	94	first strand
Strand 2	D	200	201	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	151	first strand
Strand 2	D	116	119	parallel
Strand 3	D	169	173	parallel
Strand 4	D	96	101	anti-parallel
Strand 5	D	191	196	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	8	12	parallel
Strand 3	A	63	65	parallel
Strand 4	A	204	208	anti-parallel
Strand 5	A	80	87	anti-parallel
Strand 6	A	239	242	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	200	201	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	151	first strand
Strand 2	A	116	119	parallel
Strand 3	A	169	173	parallel
Strand 4	A	96	101	anti-parallel
Strand 5	A	191	196	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	44	first strand
Strand 2	B	8	12	parallel
Strand 3	B	63	65	parallel
Strand 4	B	204	208	anti-parallel
Strand 5	B	80	87	anti-parallel
Strand 6	B	239	242	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	94	first strand
Strand 2	B	200	201	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	151	first strand
Strand 2	B	116	119	parallel
Strand 3	B	169	173	parallel
Strand 4	B	96	101	anti-parallel
Strand 5	B	191	196	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	44	first strand
Strand 2	C	8	12	parallel
Strand 3	C	63	65	parallel
Strand 4	C	204	208	anti-parallel
Strand 5	C	80	87	anti-parallel
Strand 6	C	239	241	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	200	201	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	151	first strand
Strand 2	C	116	119	parallel
Strand 3	C	169	173	parallel
Strand 4	C	96	101	anti-parallel
Strand 5	C	191	196	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	44	first strand
Strand 2	E	8	12	parallel
Strand 3	E	63	65	parallel
Strand 4	E	204	208	anti-parallel
Strand 5	E	80	87	anti-parallel
Strand 6	E	239	242	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	94	first strand
Strand 2	E	200	201	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	151	first strand
Strand 2	E	116	119	parallel
Strand 3	E	169	173	parallel
Strand 4	E	96	101	anti-parallel
Strand 5	E	191	196	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	44	first strand
Strand 2	F	10	12	parallel
Strand 3	F	63	65	parallel
Strand 4	F	204	208	anti-parallel
Strand 5	F	80	87	anti-parallel
Strand 6	F	239	242	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	93	94	first strand
Strand 2	F	200	201	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	148	151	first strand
Strand 2	F	116	119	parallel
Strand 3	F	169	173	parallel
Strand 4	F	96	101	anti-parallel
Strand 5	F	191	196	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O2K

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O2K