Analysis of interatomic Contacts of Structural Units in PDB entry:
5O2S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O2S entry

There are 8 chains in PDB entry 5O2S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1LYS 165
B
MET 22LYS 177
C
MET 1LYS 165
D
MET 22LYS 177
E
MET 1LYS 165
F
MET 22LYS 177
G
MET 1ARG 164
H
MET 22LYS 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 5O2S. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
15 26Right-handed alpha
Helix 2
AA2
A
65 75Right-handed alpha
Helix 3
AA3
A
86 105Right-handed alpha
Helix 4
AA4
A
126 138Right-handed alpha
Helix 5
AA5
A
151 165Right-handed alpha
Helix 6
AA6
B
23 35Right-handed alpha
Helix 7
AA7
B
36 46Right-handed alpha
Helix 8
AA8
B
59 68Right-handed alpha
Helix 9
AA9
B
69 79Right-handed alpha
Helix 10
AB1
B
92 101Right-handed alpha
Helix 11
AB2
B
102 112Right-handed alpha
Helix 12
AB3
B
125 134Right-handed alpha
Helix 13
AB4
B
135 145Right-handed alpha
Helix 14
AB5
B
158 167Right-handed alpha
Helix 15
AB6
B
168 175Right-handed alpha
Helix 16
AB7
C
15 26Right-handed alpha
Helix 17
AB8
C
65 75Right-handed alpha
Helix 18
AB9
C
86 105Right-handed alpha
Helix 19
AC1
C
126 138Right-handed alpha
Helix 20
AC2
C
151 165Right-handed alpha
Helix 21
AC3
D
23 35Right-handed alpha
Helix 22
AC4
D
36 46Right-handed alpha
Helix 23
AC5
D
59 68Right-handed alpha
Helix 24
AC6
D
69 79Right-handed alpha
Helix 25
AC7
D
92 101Right-handed alpha
Helix 26
AC8
D
102 112Right-handed alpha
Helix 27
AC9
D
125 134Right-handed alpha
Helix 28
AD1
D
135 145Right-handed alpha
Helix 29
AD2
D
158 167Right-handed alpha
Helix 30
AD3
D
168 175Right-handed alpha
Helix 31
AD4
E
15 26Right-handed alpha
Helix 32
AD5
E
65 75Right-handed alpha
Helix 33
AD6
E
86 105Right-handed alpha
Helix 34
AD7
E
126 138Right-handed alpha
Helix 35
AD8
E
151 165Right-handed alpha
Helix 36
AD9
F
23 34Right-handed alpha
Helix 37
AE1
F
36 46Right-handed alpha
Helix 38
AE2
F
59 68Right-handed alpha
Helix 39
AE3
F
69 79Right-handed alpha
Helix 40
AE4
F
92 101Right-handed alpha
Helix 41
AE5
F
102 112Right-handed alpha
Helix 42
AE6
F
125 134Right-handed alpha
Helix 43
AE7
F
135 145Right-handed alpha
Helix 44
AE8
F
158 167Right-handed alpha
Helix 45
AE9
F
168 175Right-handed alpha
Helix 46
AF1
G
15 26Right-handed alpha
Helix 47
AF2
G
65 75Right-handed alpha
Helix 48
AF3
G
86 105Right-handed alpha
Helix 49
AF4
G
126 138Right-handed alpha
Helix 50
AF5
G
151 163Right-handed alpha
Helix 51
AF6
H
23 35Right-handed alpha
Helix 52
AF7
H
36 46Right-handed alpha
Helix 53
AF8
H
59 68Right-handed alpha
Helix 54
AF9
H
69 79Right-handed alpha
Helix 55
AG1
H
92 101Right-handed alpha
Helix 56
AG2
H
102 112Right-handed alpha
Helix 57
AG3
H
125 134Right-handed alpha
Helix 58
AG4
H
135 145Right-handed alpha
Helix 59
AG5
H
158 167Right-handed alpha
Helix 60
AG6
H
168 175Right-handed alpha
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There are 4 sheets in PDB entry 5O2S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
39 46first strand
Strand 2
A
49 57anti-parallel
Strand 3
A
2 10parallel
Strand 4
A
77 83parallel
Strand 5
A
111 116parallel
Strand 6
A
141 143parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
39 46first strand
Strand 2
C
49 57anti-parallel
Strand 3
C
2 9parallel
Strand 4
C
77 83parallel
Strand 5
C
111 116parallel
Strand 6
C
141 143parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
39 46first strand
Strand 2
E
49 57anti-parallel
Strand 3
E
2 10parallel
Strand 4
E
77 83parallel
Strand 5
E
111 116parallel
Strand 6
E
141 143parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
39 46first strand
Strand 2
G
49 57anti-parallel
Strand 3
G
2 9parallel
Strand 4
G
77 83parallel
Strand 5
G
111 116parallel
Strand 6
G
141 143parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il