Analysis of interatomic Contacts of Structural Units in PDB entry:
5O34


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O34 entry

There are 3 chains in PDB entry 5O34 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 46HIS 274
B
 ILE 46HIS 274
C
 ILE 46ALA 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5O34. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 87Right-handed alpha
Helix 2
AA2
A
120 138Right-handed alpha
Helix 3
AA3
A
152 159Right-handed alpha
Helix 4
AA4
A
175 180Right-handed alpha
Helix 5
AA5
A
183 195Right-handed alpha
Helix 6
AA6
A
195 206Right-handed alpha
Helix 7
AA7
A
211 217Right-handed alpha
Helix 8
AA8
A
225 227Right-handed 310
Helix 9
AA9
A
228 243Right-handed alpha
Helix 10
AB1
A
244 250Right-handed alpha
Helix 11
AB2
A
251 274Right-handed alpha
Helix 12
AB3
B
71 87Right-handed alpha
Helix 13
AB4
B
122 138Right-handed alpha
Helix 14
AB5
B
152 159Right-handed alpha
Helix 15
AB6
B
175 180Right-handed alpha
Helix 16
AB7
B
183 195Right-handed alpha
Helix 17
AB8
B
195 206Right-handed alpha
Helix 18
AB9
B
211 217Right-handed alpha
Helix 19
AC1
B
225 227Right-handed 310
Helix 20
AC2
B
228 242Right-handed alpha
Helix 21
AC3
B
244 256Right-handed alpha
Helix 22
AC4
B
256 274Right-handed alpha
Helix 23
AC5
C
71 87Right-handed alpha
Helix 24
AC6
C
125 138Right-handed alpha
Helix 25
AC7
C
152 159Right-handed alpha
Helix 26
AC8
C
175 180Right-handed alpha
Helix 27
AC9
C
183 206Right-handed alpha
Helix 28
AD1
C
211 217Right-handed alpha
Helix 29
AD2
C
225 227Right-handed 310
Helix 30
AD3
C
228 242Right-handed alpha
Helix 31
AD4
C
244 250Right-handed alpha
Helix 32
AD5
C
251 256Right-handed alpha
Helix 33
AD6
C
256 270Right-handed alpha
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There are 6 sheets in PDB entry 5O34. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
55 59anti-parallel
Strand 3
A
92 96parallel
Strand 4
A
142 146parallel
Strand 5
A
163 167parallel
Strand 6
A
222 224parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
171 173parallel
Strand 3
A
209 210anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
55 59anti-parallel
Strand 3
B
92 96parallel
Strand 4
B
142 146parallel
Strand 5
B
163 167parallel
Strand 6
B
222 224parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 151first strand
Strand 2
B
171 173parallel
Strand 3
B
209 210anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 52first strand
Strand 2
C
55 59anti-parallel
Strand 3
C
92 96parallel
Strand 4
C
142 146parallel
Strand 5
C
163 167parallel
Strand 6
C
222 224parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
149 151first strand
Strand 2
C
171 173parallel
Strand 3
C
209 210anti-parallel
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