Analysis of interatomic Contacts of Structural Units in PDB entry:
5O35

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O35 entry

There are 2 chains in PDB entry 5O35 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 23	GLN 664
B	ASP 752	ASN 1382

There are 34 helices in PDB entry 5O35. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	77	81	Right-handed 310
Helix 2	AA2	A	303	311	Right-handed alpha
Helix 3	AA3	A	315	320	Right-handed 310
Helix 4	AA4	A	448	452	Right-handed 310
Helix 5	AA5	A	522	526	Right-handed 310
Helix 6	AA6	A	600	606	Right-handed alpha
Helix 7	AA7	A	612	623	Right-handed alpha
Helix 8	AA8	A	634	642	Right-handed alpha
Helix 9	AA9	B	757	761	Right-handed 310
Helix 10	AB1	B	948	953	Right-handed alpha
Helix 11	AB2	B	996	1004	Right-handed 310
Helix 12	AB3	B	1012	1032	Right-handed alpha
Helix 13	AB4	B	1033	1038	Right-handed alpha
Helix 14	AB5	B	1041	1058	Right-handed alpha
Helix 15	AB6	B	1075	1089	Right-handed alpha
Helix 16	AB7	B	1096	1110	Right-handed alpha
Helix 17	AB8	B	1130	1135	Right-handed 310
Helix 18	AB9	B	1138	1154	Right-handed alpha
Helix 19	AC1	B	1164	1179	Right-handed alpha
Helix 20	AC2	B	1185	1198	Right-handed alpha
Helix 21	AC3	B	1203	1213	Right-handed alpha
Helix 22	AC4	B	1214	1218	Right-handed 310
Helix 23	AC5	B	1225	1241	Right-handed alpha
Helix 24	AC6	B	1248	1259	Right-handed alpha
Helix 25	AC7	B	1268	1286	Right-handed alpha
Helix 26	AC8	B	1414	1423	Right-handed alpha
Helix 27	AC9	B	1430	1436	Right-handed alpha
Helix 28	AD1	B	1497	1501	Right-handed 310
Helix 29	AD2	B	1528	1537	Right-handed alpha
Helix 30	AD3	B	1590	1595	Right-handed alpha
Helix 31	AD4	B	1614	1618	Right-handed 310
Helix 32	AD5	B	1633	1638	Right-handed alpha
Helix 33	AD6	B	1642	1659	Right-handed alpha
Helix 34	AD7	C	1171	1177	Right-handed alpha

There are 35 sheets in PDB entry 5O35. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	89	first strand
Strand 2	A	39	47	anti-parallel
Strand 3	A	25	31	anti-parallel
Strand 4	A	644	648	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	115	124	parallel
Strand 3	A	104	112	anti-parallel
Strand 4	A	53	61	anti-parallel
Strand 5	A	68	76	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	134	first strand
Strand 2	A	144	152	anti-parallel
Strand 3	A	188	194	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	A	218	224	parallel
Strand 3	A	202	210	anti-parallel
Strand 4	A	162	168	anti-parallel
Strand 5	A	174	181	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	238	first strand
Strand 2	A	251	259	anti-parallel
Strand 3	A	297	302	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	A	338	349	parallel
Strand 3	A	323	332	anti-parallel
Strand 4	A	267	277	anti-parallel
Strand 5	A	280	293	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	369	377	anti-parallel
Strand 3	A	406	412	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	438	445	parallel
Strand 3	A	420	426	anti-parallel
Strand 4	A	388	391	anti-parallel
Strand 5	A	394	400	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	459	first strand
Strand 2	A	470	478	anti-parallel
Strand 3	A	514	520	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	507	first strand
Strand 2	A	489	496	anti-parallel
Strand 3	A	528	539	anti-parallel
Strand 4	A	543	554	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	567	first strand
Strand 2	A	580	588	anti-parallel
Strand 3	B	786	794	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	770	771	first strand
Strand 2	A	592	599	anti-parallel
Strand 3	B	801	810	anti-parallel
Strand 4	B	814	817	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	775	777	first strand
Strand 2	A	592	599	anti-parallel
Strand 3	B	801	810	anti-parallel
Strand 4	B	821	824	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	829	834	first strand
Strand 2	B	845	853	anti-parallel
Strand 3	B	892	902	anti-parallel
Strand 4	B	872	873	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	838	840	first strand
Strand 2	B	922	932	parallel
Strand 3	B	906	916	anti-parallel
Strand 4	B	860	866	anti-parallel
Strand 5	B	883	888	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	936	947	first strand
Strand 2	B	1339	1350	anti-parallel
Strand 3	B	977	985	anti-parallel
Strand 4	B	1320	1324	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	957	962	first strand
Strand 2	B	1330	1335	anti-parallel
Strand 3	B	1293	1299	anti-parallel
Strand 4	B	1308	1312	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1361	1369	first strand
Strand 2	B	1383	1392	anti-parallel
Strand 3	B	1457	1465	anti-parallel
Strand 4	B	1411	1413	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1427	1428	first strand
Strand 2	B	1443	1448	anti-parallel
Strand 3	B	1401	1406	anti-parallel
Strand 4	B	1475	1481	anti-parallel
Strand 5	B	1484	1493	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1504	1507	first strand
Strand 2	B	1510	1513	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1611	1612	first strand
Strand 2	B	1619	1621	anti-parallel
Strand 3	B	1581	1587	parallel
Strand 4	B	1558	1570	anti-parallel
Strand 5	B	1541	1553	anti-parallel
Strand 6	B	1601	1607	anti-parallel
Strand 7	B	1627	1631	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	33	first strand
Strand 2	C	47	52	anti-parallel
Strand 3	C	62	67	anti-parallel
Strand 4	C	70	73	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	57	first strand
Strand 2	C	81	82	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	99	first strand
Strand 2	C	109	114	anti-parallel
Strand 3	C	126	128	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	121	first strand
Strand 2	C	140	143	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	C	168	169	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	156	first strand
Strand 2	C	177	178	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	175	first strand
Strand 2	C	189	191	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	185	first strand
Strand 2	C	204	207	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	220	first strand
Strand 2	C	232	237	anti-parallel
Strand 3	C	248	252	anti-parallel
Strand 4	C	255	256	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	243	first strand
Strand 2	C	262	263	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1118	1120	first strand
Strand 2	C	1133	1138	anti-parallel
Strand 3	C	1149	1151	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1143	1145	first strand
Strand 2	C	1162	1164	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1167	1170	first strand
Strand 2	C	1188	1191	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1179	1181	first strand
Strand 2	C	1196	1201	anti-parallel
Strand 3	C	1215	1217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O35

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O35