Analysis of interatomic Contacts of Structural Units in PDB entry:
5O3X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O3X entry

There are 2 chains in PDB entry 5O3X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 8	ASP 724
B	GLY 5	ALA 541

There are 44 helices in PDB entry 5O3X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	39	Right-handed 310
Helix 2	AA2	A	42	63	Right-handed alpha
Helix 3	AA3	A	65	78	Right-handed alpha
Helix 4	AA4	A	121	129	Right-handed 310
Helix 5	AA5	A	222	226	Right-handed 310
Helix 6	AA6	A	276	280	Right-handed 310
Helix 7	AA7	A	439	441	Right-handed 310
Helix 8	AA8	A	493	503	Right-handed alpha
Helix 9	AA9	A	519	525	Right-handed alpha
Helix 10	AB1	A	526	530	Right-handed 310
Helix 11	AB2	A	531	548	Right-handed alpha
Helix 12	AB3	A	552	554	Right-handed 310
Helix 13	AB4	A	562	575	Right-handed alpha
Helix 14	AB5	A	576	579	Right-handed 310
Helix 15	AB6	A	593	597	Right-handed 310
Helix 16	AB7	A	599	602	Right-handed 310
Helix 17	AB8	A	603	608	Right-handed alpha
Helix 18	AB9	A	612	623	Right-handed alpha
Helix 19	AC1	A	624	627	Right-handed 310
Helix 20	AC2	A	630	634	Right-handed 310
Helix 21	AC3	A	658	673	Right-handed alpha
Helix 22	AC4	A	699	718	Right-handed alpha
Helix 23	AC5	B	34	39	Right-handed 310
Helix 24	AC6	B	42	63	Right-handed alpha
Helix 25	AC7	B	65	78	Right-handed alpha
Helix 26	AC8	B	121	129	Right-handed 310
Helix 27	AC9	B	222	226	Right-handed 310
Helix 28	AD1	B	276	281	Right-handed 310
Helix 29	AD2	B	439	441	Right-handed 310
Helix 30	AD3	B	493	503	Right-handed alpha
Helix 31	AD4	B	519	525	Right-handed alpha
Helix 32	AD5	B	526	530	Right-handed 310
Helix 33	AD6	B	531	548	Right-handed alpha
Helix 34	AD7	B	552	554	Right-handed 310
Helix 35	AD8	B	562	575	Right-handed alpha
Helix 36	AD9	B	576	579	Right-handed 310
Helix 37	AE1	B	593	597	Right-handed 310
Helix 38	AE2	B	599	602	Right-handed 310
Helix 39	AE3	B	603	608	Right-handed alpha
Helix 40	AE4	B	612	623	Right-handed alpha
Helix 41	AE5	B	624	627	Right-handed 310
Helix 42	AE6	B	630	634	Right-handed 310
Helix 43	AE7	B	658	673	Right-handed alpha
Helix 44	AE8	B	699	718	Right-handed alpha

There are 20 sheets in PDB entry 5O3X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	25	first strand
Strand 2	A	28	31	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	91	97	anti-parallel
Strand 3	A	86	88	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	91	97	anti-parallel
Strand 3	A	105	110	anti-parallel
Strand 4	A	117	120	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	137	first strand
Strand 2	A	143	148	anti-parallel
Strand 3	A	156	162	anti-parallel
Strand 4	A	168	176	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	189	192	anti-parallel
Strand 3	A	214	218	anti-parallel
Strand 4	A	227	230	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	244	first strand
Strand 2	A	250	256	anti-parallel
Strand 3	A	264	269	anti-parallel
Strand 4	A	290	293	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	306	first strand
Strand 2	A	309	314	anti-parallel
Strand 3	A	322	327	anti-parallel
Strand 4	A	330	338	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	352	first strand
Strand 2	A	356	363	anti-parallel
Strand 3	A	366	373	anti-parallel
Strand 4	A	379	384	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	391	first strand
Strand 2	A	401	408	anti-parallel
Strand 3	A	411	419	anti-parallel
Strand 4	A	428	432	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	451	first strand
Strand 2	A	457	465	anti-parallel
Strand 3	A	506	510	anti-parallel
Strand 4	A	476	479	parallel
Strand 5	A	556	561	parallel
Strand 6	A	581	585	parallel
Strand 7	A	644	650	parallel
Strand 8	A	685	690	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	25	first strand
Strand 2	B	28	31	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	86	88	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	105	110	anti-parallel
Strand 4	B	117	120	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	137	first strand
Strand 2	B	143	148	anti-parallel
Strand 3	B	156	162	anti-parallel
Strand 4	B	168	176	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	B	189	192	anti-parallel
Strand 3	B	214	218	anti-parallel
Strand 4	B	227	230	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	244	first strand
Strand 2	B	250	256	anti-parallel
Strand 3	B	264	269	anti-parallel
Strand 4	B	290	293	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	306	first strand
Strand 2	B	309	314	anti-parallel
Strand 3	B	322	327	anti-parallel
Strand 4	B	330	338	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	352	first strand
Strand 2	B	356	363	anti-parallel
Strand 3	B	366	373	anti-parallel
Strand 4	B	379	384	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	391	first strand
Strand 2	B	401	408	anti-parallel
Strand 3	B	411	419	anti-parallel
Strand 4	B	428	432	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	451	first strand
Strand 2	B	457	465	anti-parallel
Strand 3	B	506	510	anti-parallel
Strand 4	B	476	479	parallel
Strand 5	B	556	561	parallel
Strand 6	B	581	585	parallel
Strand 7	B	644	650	parallel
Strand 8	B	685	690	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O3X

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O3X