Analysis of interatomic Contacts of Structural Units in PDB entry:
5O48

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O48 entry

There are 3 chains in PDB entry 5O48 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 26	LEU 410
B	ILE 26	LEU 410
C	ASP 27	LEU 410

There are 44 helices in PDB entry 5O48. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	34	Right-handed 310
Helix 2	AA2	A	56	60	Right-handed 310
Helix 3	AA3	A	80	95	Right-handed alpha
Helix 4	AA4	A	108	117	Right-handed alpha
Helix 5	AA5	A	122	124	Right-handed 310
Helix 6	AA6	A	167	170	Right-handed 310
Helix 7	AA7	A	173	188	Right-handed alpha
Helix 8	AA8	A	217	224	Right-handed alpha
Helix 9	AA9	A	234	242	Right-handed alpha
Helix 10	AB1	A	257	259	Right-handed 310
Helix 11	AB2	A	260	273	Right-handed alpha
Helix 12	AB3	A	282	291	Right-handed alpha
Helix 13	AB4	A	344	359	Right-handed alpha
Helix 14	AB5	A	371	376	Right-handed 310
Helix 15	AB6	A	401	405	Right-handed 310
Helix 16	AB7	B	30	34	Right-handed 310
Helix 17	AB8	B	56	60	Right-handed 310
Helix 18	AB9	B	80	95	Right-handed alpha
Helix 19	AC1	B	108	117	Right-handed alpha
Helix 20	AC2	B	122	124	Right-handed 310
Helix 21	AC3	B	167	170	Right-handed 310
Helix 22	AC4	B	173	188	Right-handed alpha
Helix 23	AC5	B	217	224	Right-handed alpha
Helix 24	AC6	B	234	243	Right-handed alpha
Helix 25	AC7	B	257	259	Right-handed 310
Helix 26	AC8	B	260	273	Right-handed alpha
Helix 27	AC9	B	282	291	Right-handed alpha
Helix 28	AD1	B	344	359	Right-handed alpha
Helix 29	AD2	B	371	376	Right-handed 310
Helix 30	AD3	B	401	403	Right-handed 310
Helix 31	AD4	C	30	34	Right-handed 310
Helix 32	AD5	C	56	60	Right-handed 310
Helix 33	AD6	C	80	95	Right-handed alpha
Helix 34	AD7	C	108	117	Right-handed alpha
Helix 35	AD8	C	122	124	Right-handed 310
Helix 36	AD9	C	167	170	Right-handed 310
Helix 37	AE1	C	173	188	Right-handed alpha
Helix 38	AE2	C	217	224	Right-handed alpha
Helix 39	AE3	C	257	259	Right-handed 310
Helix 40	AE4	C	260	273	Right-handed alpha
Helix 41	AE5	C	282	291	Right-handed alpha
Helix 42	AE6	C	344	359	Right-handed alpha
Helix 43	AE7	C	371	376	Right-handed 310
Helix 44	AE8	C	401	405	Right-handed 310

There are 12 sheets in PDB entry 5O48. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	396	397	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	75	first strand
Strand 2	A	126	131	anti-parallel
Strand 3	A	136	150	anti-parallel
Strand 4	A	153	165	anti-parallel
Strand 5	A	193	198	parallel
Strand 6	A	382	393	anti-parallel
Strand 7	A	207	215	anti-parallel
Strand 8	A	363	367	anti-parallel
Strand 9	A	332	335	parallel
Strand 10	A	307	316	anti-parallel
Strand 11	A	277	279	first strand

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	255	first strand
Strand 2	A	297	304	anti-parallel
Strand 3	A	307	316	anti-parallel
Strand 4	A	332	335	anti-parallel
Strand 5	A	363	367	parallel
Strand 6	A	207	215	anti-parallel
Strand 7	A	382	393	anti-parallel
Strand 8	A	193	198	anti-parallel
Strand 9	A	153	165	parallel
Strand 10	A	136	150	anti-parallel
Strand 11	A	339	340	first strand

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	105	first strand
Strand 2	A	319	321	anti-parallel
Strand 3	A	329	330	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	396	397	anti-parallel

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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	75	first strand
Strand 2	B	126	131	anti-parallel
Strand 3	B	136	150	anti-parallel
Strand 4	B	153	165	anti-parallel
Strand 5	B	194	198	parallel
Strand 6	B	382	393	anti-parallel
Strand 7	B	207	215	anti-parallel
Strand 8	B	363	367	anti-parallel
Strand 9	B	332	335	parallel
Strand 10	B	307	316	anti-parallel
Strand 11	B	339	340	anti-parallel

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There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	255	first strand
Strand 2	B	297	304	anti-parallel
Strand 3	B	307	316	anti-parallel
Strand 4	B	332	335	anti-parallel
Strand 5	B	363	367	parallel
Strand 6	B	207	215	anti-parallel
Strand 7	B	382	393	anti-parallel
Strand 8	B	194	198	anti-parallel
Strand 9	B	153	165	parallel
Strand 10	B	136	150	anti-parallel
Strand 11	B	277	279	anti-parallel
Strand 12	B	405	406	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	319	321	anti-parallel
Strand 3	B	329	330	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	49	first strand
Strand 2	C	396	397	anti-parallel

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There are 11 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	75	first strand
Strand 2	C	126	131	anti-parallel
Strand 3	C	137	150	anti-parallel
Strand 4	C	153	165	anti-parallel
Strand 5	C	193	198	parallel
Strand 6	C	382	393	anti-parallel
Strand 7	C	207	215	anti-parallel
Strand 8	C	363	367	anti-parallel
Strand 9	C	332	335	parallel
Strand 10	C	307	316	anti-parallel
Strand 11	C	277	279	first strand

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There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	255	first strand
Strand 2	C	297	304	anti-parallel
Strand 3	C	307	316	anti-parallel
Strand 4	C	332	335	anti-parallel
Strand 5	C	363	367	parallel
Strand 6	C	207	215	anti-parallel
Strand 7	C	382	393	anti-parallel
Strand 8	C	193	198	anti-parallel
Strand 9	C	153	165	parallel
Strand 10	C	137	150	anti-parallel
Strand 11	C	339	340	first strand

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	105	first strand
Strand 2	C	319	321	anti-parallel
Strand 3	C	329	330	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O48

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O48