Analysis of interatomic Contacts of Structural Units in PDB entry:
5O4G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O4G entry

There are 3 chains in PDB entry 5O4G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	THR 1	HIS 542
A	ASP 1	CYS 214
B	GLN 1	ASP 216

There are 23 helices in PDB entry 5O4G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	19	29	Right-handed alpha
Helix 2	AA2	C	51	55	Right-handed 310
Helix 3	AA3	C	85	88	Right-handed 310
Helix 4	AA4	C	146	151	Right-handed alpha
Helix 5	AA5	C	152	156	Right-handed 310
Helix 6	AA6	C	209	213	Right-handed 310
Helix 7	AA7	C	325	329	Right-handed 310
Helix 8	AA8	C	338	343	Right-handed 310
Helix 9	AA9	C	355	360	Right-handed 310
Helix 10	AB1	C	362	366	Right-handed 310
Helix 11	AB2	C	373	381	Right-handed 310
Helix 12	AB3	C	400	404	Right-handed 310
Helix 13	AB4	C	414	417	Right-handed 310
Helix 14	AB5	C	459	464	Right-handed alpha
Helix 15	AB6	C	478	485	Right-handed alpha
Helix 16	AB7	C	493	497	Right-handed 310
Helix 17	AB8	A	79	83	Right-handed 310
Helix 18	AB9	A	121	126	Right-handed alpha
Helix 19	AC1	B	28	32	Right-handed 310
Helix 20	AC2	B	62	65	Right-handed 310
Helix 21	AC3	B	87	91	Right-handed 310
Helix 22	AC4	B	135	139	Right-handed 310
Helix 23	AC5	B	195	197	Right-handed 310

There are 20 sheets in PDB entry 5O4G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	33	35	parallel
Strand 3	C	57	58	parallel
Strand 4	C	79	80	parallel
Strand 5	C	125	126	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	41	first strand
Strand 2	C	62	65	parallel
Strand 3	C	90	95	parallel
Strand 4	C	130	134	parallel
Strand 5	C	160	162	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	237	first strand
Strand 2	C	242	243	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	252	first strand
Strand 2	C	259	261	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	269	first strand
Strand 2	C	272	274	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	283	first strand
Strand 2	C	289	290	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	301	first strand
Strand 2	C	307	311	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	320	321	first strand
Strand 2	C	347	349	parallel
Strand 3	C	383	384	parallel
Strand 4	C	408	409	parallel
Strand 5	C	438	439	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	354	first strand
Strand 2	C	388	390	parallel
Strand 3	C	419	424	parallel
Strand 4	C	443	447	parallel
Strand 5	C	471	474	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	518	first strand
Strand 2	C	513	514	anti-parallel
Strand 3	C	537	539	parallel
Strand 4	C	532	533	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	19	29	anti-parallel
Strand 3	A	62	75	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	102	107	parallel
Strand 3	A	84	86	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	88	90	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	118	first strand
Strand 2	A	129	139	anti-parallel
Strand 3	A	173	182	anti-parallel
Strand 4	A	159	161	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	195	197	anti-parallel
Strand 3	A	205	206	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	192	first strand
Strand 2	A	209	210	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	81	83	anti-parallel
Strand 4	B	69	70	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	115	119	parallel
Strand 3	B	92	97	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	143	153	anti-parallel
Strand 3	B	184	193	anti-parallel
Strand 4	B	171	173	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	204	208	anti-parallel
Strand 3	B	213	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O4G

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O4G