Analysis of interatomic Contacts of Structural Units in PDB entry:
5O4J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O4J entry

There are 4 chains in PDB entry 5O4J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 264
B
 MET 1ASP 261
C
 ASN 2LEU 263
D
 ASN 2LYS 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 5O4J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 38Right-handed alpha
Helix 2
AA2
A
53 61Right-handed alpha
Helix 3
AA3
A
74 81Right-handed 310
Helix 4
AA4
A
91 100Right-handed alpha
Helix 5
AA5
A
119 124Right-handed alpha
Helix 6
AA6
A
141 148Right-handed alpha
Helix 7
AA7
A
149 154Right-handed 310
Helix 8
AA8
A
176 194Right-handed alpha
Helix 9
AA9
A
207 214Right-handed alpha
Helix 10
AB1
A
217 226Right-handed alpha
Helix 11
AB2
A
238 252Right-handed alpha
Helix 12
AB3
B
17 38Right-handed alpha
Helix 13
AB4
B
53 62Right-handed alpha
Helix 14
AB5
B
74 81Right-handed 310
Helix 15
AB6
B
91 100Right-handed alpha
Helix 16
AB7
B
119 124Right-handed alpha
Helix 17
AB8
B
141 148Right-handed alpha
Helix 18
AB9
B
149 154Right-handed alpha
Helix 19
AC1
B
176 194Right-handed alpha
Helix 20
AC2
B
207 214Right-handed alpha
Helix 21
AC3
B
217 226Right-handed alpha
Helix 22
AC4
B
238 252Right-handed alpha
Helix 23
AC5
C
17 38Right-handed alpha
Helix 24
AC6
C
53 62Right-handed alpha
Helix 25
AC7
C
74 81Right-handed 310
Helix 26
AC8
C
91 101Right-handed alpha
Helix 27
AC9
C
119 124Right-handed alpha
Helix 28
AD1
C
141 148Right-handed alpha
Helix 29
AD2
C
149 154Right-handed alpha
Helix 30
AD3
C
176 194Right-handed alpha
Helix 31
AD4
C
207 214Right-handed alpha
Helix 32
AD5
C
217 226Right-handed alpha
Helix 33
AD6
C
238 252Right-handed alpha
Helix 34
AD7
D
17 38Right-handed alpha
Helix 35
AD8
D
53 62Right-handed alpha
Helix 36
AD9
D
74 81Right-handed 310
Helix 37
AE1
D
91 100Right-handed alpha
Helix 38
AE2
D
119 124Right-handed alpha
Helix 39
AE3
D
141 148Right-handed alpha
Helix 40
AE4
D
149 154Right-handed alpha
Helix 41
AE5
D
176 194Right-handed alpha
Helix 42
AE6
D
207 214Right-handed alpha
Helix 43
AE7
D
217 226Right-handed alpha
Helix 44
AE8
D
238 252Right-handed alpha
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There are 8 sheets in PDB entry 5O4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
10 13anti-parallel
Strand 3
A
230 234anti-parallel
Strand 4
A
198 203anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
65 72parallel
Strand 3
A
42 48parallel
Strand 4
A
108 111parallel
Strand 5
A
130 134parallel
Strand 6
A
159 167parallel
Strand 7
A
253 259anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
10 13anti-parallel
Strand 3
B
230 234anti-parallel
Strand 4
B
198 203anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
65 72parallel
Strand 3
B
42 48parallel
Strand 4
B
108 111parallel
Strand 5
B
130 134parallel
Strand 6
B
159 167parallel
Strand 7
B
253 260anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
230 234anti-parallel
Strand 3
C
198 203anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 90first strand
Strand 2
C
65 72parallel
Strand 3
C
42 48parallel
Strand 4
C
108 111parallel
Strand 5
C
130 134parallel
Strand 6
C
159 167parallel
Strand 7
C
253 260anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 13first strand
Strand 2
D
230 234anti-parallel
Strand 3
D
198 203anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
86 90first strand
Strand 2
D
65 72parallel
Strand 3
D
42 48parallel
Strand 4
D
108 111parallel
Strand 5
D
130 134parallel
Strand 6
D
159 167parallel
Strand 7
D
253 260anti-parallel
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