Analysis of interatomic Contacts of Structural Units in PDB entry:
5O4P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O4P entry

There are 2 chains in PDB entry 5O4P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 28	PHE 548
B	SER 27	PHE 548

There are 35 helices in PDB entry 5O4P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	77	83	Right-handed alpha
Helix 2	AA2	A	87	89	Right-handed 310
Helix 3	AA3	A	94	98	Right-handed 310
Helix 4	AA4	A	105	113	Right-handed alpha
Helix 5	AA5	A	141	162	Right-handed alpha
Helix 6	AA6	A	177	191	Right-handed alpha
Helix 7	AA7	A	201	211	Right-handed alpha
Helix 8	AA8	A	254	275	Right-handed alpha
Helix 9	AA9	A	281	299	Right-handed alpha
Helix 10	AB1	A	324	338	Right-handed alpha
Helix 11	AB2	A	338	349	Right-handed alpha
Helix 12	AB3	A	352	356	Right-handed 310
Helix 13	AB4	A	363	367	Right-handed 310
Helix 14	AB5	A	368	379	Right-handed alpha
Helix 15	AB6	A	392	406	Right-handed alpha
Helix 16	AB7	A	408	412	Right-handed 310
Helix 17	AB8	A	472	476	Right-handed 310
Helix 18	AB9	A	534	548	Right-handed alpha
Helix 19	AC1	B	77	83	Right-handed alpha
Helix 20	AC2	B	87	89	Right-handed 310
Helix 21	AC3	B	94	98	Right-handed 310
Helix 22	AC4	B	105	113	Right-handed alpha
Helix 23	AC5	B	141	162	Right-handed alpha
Helix 24	AC6	B	177	191	Right-handed alpha
Helix 25	AC7	B	201	211	Right-handed alpha
Helix 26	AC8	B	254	275	Right-handed alpha
Helix 27	AC9	B	281	299	Right-handed alpha
Helix 28	AD1	B	324	338	Right-handed alpha
Helix 29	AD2	B	338	349	Right-handed alpha
Helix 30	AD3	B	352	356	Right-handed 310
Helix 31	AD4	B	363	367	Right-handed 310
Helix 32	AD5	B	368	379	Right-handed alpha
Helix 33	AD6	B	392	407	Right-handed alpha
Helix 34	AD7	B	472	476	Right-handed 310
Helix 35	AD8	B	534	548	Right-handed alpha

There are 15 sheets in PDB entry 5O4P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	39	46	anti-parallel
Strand 3	A	62	63	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	39	46	anti-parallel
Strand 3	A	31	34	anti-parallel
Strand 4	A	167	172	parallel
Strand 5	A	194	200	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	76	first strand
Strand 2	A	66	68	anti-parallel
Strand 3	A	91	92	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	122	first strand
Strand 2	A	125	131	anti-parallel
Strand 3	A	137	140	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	362	first strand
Strand 2	A	217	225	parallel
Strand 3	A	230	238	anti-parallel
Strand 4	A	241	250	anti-parallel
Strand 5	A	415	419	parallel
Strand 6	A	442	443	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	313	first strand
Strand 2	A	316	323	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	432	437	first strand
Strand 2	A	424	428	anti-parallel
Strand 3	A	461	467	anti-parallel
Strand 4	A	477	485	anti-parallel
Strand 5	A	525	529	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	451	first strand
Strand 2	A	497	503	anti-parallel
Strand 3	A	509	515	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	39	46	anti-parallel
Strand 3	B	62	63	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	39	46	anti-parallel
Strand 3	B	31	34	anti-parallel
Strand 4	B	167	172	parallel
Strand 5	B	194	200	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	76	first strand
Strand 2	B	66	68	anti-parallel
Strand 3	B	91	92	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	122	first strand
Strand 2	B	125	131	anti-parallel
Strand 3	B	137	140	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	362	first strand
Strand 2	B	217	225	parallel
Strand 3	B	230	238	anti-parallel
Strand 4	B	241	250	anti-parallel
Strand 5	B	415	417	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	313	first strand
Strand 2	B	316	323	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	437	first strand
Strand 2	B	424	428	anti-parallel
Strand 3	B	461	467	anti-parallel
Strand 4	B	477	485	anti-parallel
Strand 5	B	523	529	anti-parallel
Strand 6	B	509	515	anti-parallel
Strand 7	B	497	503	anti-parallel
Strand 8	B	445	451	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O4P

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O4P