Analysis of interatomic Contacts of Structural Units in PDB entry:
5O4Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O4Z entry

There is 1 chain in PDB entry 5O4Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2SER 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 5O4Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 11Right-handed alpha
Helix 2
AA2
A
23 40Right-handed alpha
Helix 3
AA3
A
53 57Right-handed 310
Helix 4
AA4
A
61 63Right-handed 310
Helix 5
AA5
A
83 96Right-handed 310
Helix 6
AA6
A
123 136Right-handed alpha
Helix 7
AA7
A
140 155Right-handed alpha
Helix 8
AA8
A
164 177Right-handed alpha
Helix 9
AA9
A
180 190Right-handed alpha
Helix 10
AB1
A
193 207Right-handed alpha
Helix 11
AB2
A
221 228Right-handed alpha
Helix 12
AB3
A
237 244Right-handed alpha
Helix 13
AB4
A
273 281Right-handed alpha
Helix 14
AB5
A
298 319Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5O4Z. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
43 47parallel
Strand 3
A
13 17parallel
Strand 4
A
75 79parallel
Strand 5
A
99 103parallel
Strand 6
A
114 117parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 210first strand
Strand 2
A
215 220anti-parallel
Strand 3
A
250 256parallel
Strand 4
A
261 268anti-parallel
Strand 5
A
289 295anti-parallel
Strand 6
A
284 286anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il