Analysis of interatomic Contacts of Structural Units in PDB entry:
5O59


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O59 entry

There are 2 chains in PDB entry 5O59 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2GLY 430
B
 GLN 2GLY 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5O59. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 39Right-handed 310
Helix 2
AA2
A
63 70Right-handed alpha
Helix 3
AA3
A
164 168Right-handed 310
Helix 4
AA4
A
241 244Right-handed 310
Helix 5
AA5
A
327 339Right-handed alpha
Helix 6
AA6
A
341 346Right-handed alpha
Helix 7
AA7
A
347 357Right-handed alpha
Helix 8
AA8
A
374 379Right-handed alpha
Helix 9
AA9
A
403 411Right-handed alpha
Helix 10
AB1
B
36 39Right-handed 310
Helix 11
AB2
B
63 70Right-handed alpha
Helix 12
AB3
B
164 168Right-handed 310
Helix 13
AB4
B
241 244Right-handed 310
Helix 14
AB5
B
327 339Right-handed alpha
Helix 15
AB6
B
341 346Right-handed alpha
Helix 16
AB7
B
347 357Right-handed alpha
Helix 17
AB8
B
374 379Right-handed alpha
Helix 18
AB9
B
403 411Right-handed alpha
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There are 16 sheets in PDB entry 5O59. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 19first strand
Strand 2
A
25 34anti-parallel
Strand 3
A
106 111anti-parallel
Strand 4
A
361 367anti-parallel
Strand 5
A
141 147anti-parallel
Strand 6
A
216 218anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
71 73anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
90 94anti-parallel
Strand 3
A
415 419anti-parallel
Strand 4
A
126 132anti-parallel
Strand 5
A
288 295anti-parallel
Strand 6
A
298 305anti-parallel
Strand 7
A
308 311anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
102 104anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
359 361anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
422 425anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 209first strand
Strand 2
A
236 239anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
225 228anti-parallel
Strand 3
A
261 263anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 19first strand
Strand 2
B
25 34anti-parallel
Strand 3
B
106 111anti-parallel
Strand 4
B
361 368anti-parallel
Strand 5
B
140 147anti-parallel
Strand 6
B
216 218anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 43first strand
Strand 2
B
71 73anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 87first strand
Strand 2
B
90 94anti-parallel
Strand 3
B
415 419anti-parallel
Strand 4
B
126 132anti-parallel
Strand 5
B
288 294anti-parallel
Strand 6
B
299 305anti-parallel
Strand 7
B
308 311anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
102 104anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 121first strand
Strand 2
B
359 361anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 128first strand
Strand 2
B
422 425anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 209first strand
Strand 2
B
236 239anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 214first strand
Strand 2
B
225 228anti-parallel
Strand 3
B
261 263anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il