Analysis of interatomic Contacts of Structural Units in PDB entry:
5O5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O5B entry

There are 4 chains in PDB entry 5O5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 GLN 66TYR 300
2
 ARG 12GLN 271
3
 GLY 1ALA 235
4
 ILE 25ALA 41
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 5O5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
1
74 79Right-handed alpha
Helix 2
AA2
1
114 121Right-handed alpha
Helix 3
AA3
1
170 175Right-handed 310
Helix 4
AA4
2
35 37Right-handed 310
Helix 5
AA5
2
91 98Right-handed alpha
Helix 6
AA6
2
143 148Right-handed alpha
Helix 7
AA7
2
149 153Right-handed 310
Helix 8
AA8
3
43 48Right-handed alpha
Helix 9
AA9
3
64 68Right-handed 310
Helix 10
AB1
3
98 105Right-handed alpha
Helix 11
AB2
3
144 148Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 5O5B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
83 90first strand
Strand 2
1
254 260anti-parallel
Strand 3
1
123 138anti-parallel
Strand 4
1
203 204anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
190 194first strand
Strand 2
1
123 138anti-parallel
Strand 3
1
263 270anti-parallel
Strand 4
3
39 40anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
103 107first strand
Strand 2
1
238 243anti-parallel
Strand 3
1
152 158anti-parallel
Strand 4
1
180 184anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
16 18first strand
Strand 2
2
21 23anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
32 33first strand
Strand 2
2
204 209parallel
Strand 3
2
99 111anti-parallel
Strand 4
2
246 252anti-parallel
Strand 5
2
64 71anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
32 33first strand
Strand 2
2
204 209parallel
Strand 3
2
99 111anti-parallel
Strand 4
2
255 262anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
119 128first strand
Strand 2
2
226 237anti-parallel
Strand 3
2
78 82anti-parallel
Strand 4
2
154 155anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
51 52first strand
Strand 2
3
210 214anti-parallel
Strand 3
3
115 120anti-parallel
Strand 4
3
166 167anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
83 86first strand
Strand 2
3
189 196anti-parallel
Strand 3
3
129 135anti-parallel
Strand 4
3
152 157anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
177 178first strand
Strand 2
3
107 111anti-parallel
Strand 3
3
221 225anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il