Analysis of interatomic Contacts of Structural Units in PDB entry:
5O5C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O5C entry

There are 6 chains in PDB entry 5O5C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 23	PRO 510
B	PRO 22	PRO 510
C	PRO 22	GLU 505
D	PRO 22	PRO 510
E	HIS 23	GLY 509
F	PRO 22	PRO 510

There are140 helices in PDB entry 5O5C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	30	Right-handed 310
Helix 2	AA2	A	31	52	Right-handed alpha
Helix 3	AA3	A	61	70	Right-handed alpha
Helix 4	AA4	A	80	92	Right-handed alpha
Helix 5	AA5	A	113	127	Right-handed alpha
Helix 6	AA6	A	132	136	Right-handed 310
Helix 7	AA7	A	137	155	Right-handed alpha
Helix 8	AA8	A	167	188	Right-handed alpha
Helix 9	AA9	A	192	197	Right-handed alpha
Helix 10	AB1	A	201	203	Right-handed 310
Helix 11	AB2	A	215	224	Right-handed alpha
Helix 12	AB3	A	227	229	Right-handed 310
Helix 13	AB4	A	243	257	Right-handed alpha
Helix 14	AB5	A	278	290	Right-handed alpha
Helix 15	AB6	A	299	306	Right-handed 310
Helix 16	AB7	A	309	314	Right-handed 310
Helix 17	AB8	A	315	319	Right-handed 310
Helix 18	AB9	A	326	330	Right-handed alpha
Helix 19	AC1	A	343	351	Right-handed 310
Helix 20	AC2	A	369	374	Right-handed 310
Helix 21	AC3	A	382	393	Right-handed alpha
Helix 22	AC4	A	394	419	Right-handed alpha
Helix 23	AC5	A	448	463	Right-handed alpha
Helix 24	AC6	A	488	509	Right-handed alpha
Helix 25	AC7	B	31	52	Right-handed alpha
Helix 26	AC8	B	61	67	Right-handed alpha
Helix 27	AC9	B	80	92	Right-handed alpha
Helix 28	AD1	B	113	127	Right-handed alpha
Helix 29	AD2	B	132	137	Right-handed alpha
Helix 30	AD3	B	137	155	Right-handed alpha
Helix 31	AD4	B	167	188	Right-handed alpha
Helix 32	AD5	B	192	197	Right-handed alpha
Helix 33	AD6	B	199	203	Right-handed 310
Helix 34	AD7	B	215	224	Right-handed alpha
Helix 35	AD8	B	227	229	Right-handed 310
Helix 36	AD9	B	243	257	Right-handed alpha
Helix 37	AE1	B	278	289	Right-handed alpha
Helix 38	AE2	B	299	306	Right-handed 310
Helix 39	AE3	B	309	314	Right-handed 310
Helix 40	AE4	B	315	319	Right-handed 310
Helix 41	AE5	B	326	330	Right-handed alpha
Helix 42	AE6	B	343	351	Right-handed 310
Helix 43	AE7	B	369	374	Right-handed 310
Helix 44	AE8	B	382	393	Right-handed alpha
Helix 45	AE9	B	394	419	Right-handed alpha
Helix 46	AF1	B	446	463	Right-handed alpha
Helix 47	AF2	B	488	509	Right-handed alpha
Helix 48	AF3	C	31	52	Right-handed alpha
Helix 49	AF4	C	61	68	Right-handed alpha
Helix 50	AF5	C	80	92	Right-handed alpha
Helix 51	AF6	C	113	127	Right-handed alpha
Helix 52	AF7	C	132	136	Right-handed 310
Helix 53	AF8	C	137	155	Right-handed alpha
Helix 54	AF9	C	167	188	Right-handed alpha
Helix 55	AG1	C	192	197	Right-handed alpha
Helix 56	AG2	C	201	203	Right-handed 310
Helix 57	AG3	C	215	224	Right-handed alpha
Helix 58	AG4	C	227	229	Right-handed 310
Helix 59	AG5	C	243	257	Right-handed alpha
Helix 60	AG6	C	278	289	Right-handed alpha
Helix 61	AG7	C	299	306	Right-handed 310
Helix 62	AG8	C	309	314	Right-handed 310
Helix 63	AG9	C	315	319	Right-handed 310
Helix 64	AH1	C	326	330	Right-handed alpha
Helix 65	AH2	C	343	350	Right-handed 310
Helix 66	AH3	C	369	374	Right-handed 310
Helix 67	AH4	C	382	393	Right-handed alpha
Helix 68	AH5	C	394	419	Right-handed alpha
Helix 69	AH6	C	447	463	Right-handed alpha
Helix 70	AH7	C	488	505	Right-handed alpha
Helix 71	AH8	D	31	53	Right-handed alpha
Helix 72	AH9	D	61	70	Right-handed alpha
Helix 73	AI1	D	80	92	Right-handed alpha
Helix 74	AI2	D	113	127	Right-handed alpha
Helix 75	AI3	D	132	136	Right-handed 310
Helix 76	AI4	D	137	155	Right-handed alpha
Helix 77	AI5	D	167	188	Right-handed alpha
Helix 78	AI6	D	192	197	Right-handed alpha
Helix 79	AI7	D	201	203	Right-handed 310
Helix 80	AI8	D	215	224	Right-handed alpha
Helix 81	AI9	D	227	229	Right-handed 310
Helix 82	AJ1	D	243	257	Right-handed alpha
Helix 83	AJ2	D	278	290	Right-handed alpha
Helix 84	AJ3	D	299	306	Right-handed 310
Helix 85	AJ4	D	309	314	Right-handed 310
Helix 86	AJ5	D	315	319	Right-handed 310
Helix 87	AJ6	D	325	330	Right-handed alpha
Helix 88	AJ7	D	343	351	Right-handed 310
Helix 89	AJ8	D	369	374	Right-handed 310
Helix 90	AJ9	D	382	393	Right-handed alpha
Helix 91	AK1	D	395	419	Right-handed alpha
Helix 92	AK2	D	447	463	Right-handed alpha
Helix 93	AK3	D	488	509	Right-handed alpha
Helix 94	AK4	E	28	30	Right-handed 310
Helix 95	AK5	E	31	53	Right-handed alpha
Helix 96	AK6	E	61	71	Right-handed alpha
Helix 97	AK7	E	80	92	Right-handed alpha
Helix 98	AK8	E	113	127	Right-handed alpha
Helix 99	AK9	E	132	136	Right-handed 310
Helix 100	AL1	E	137	155	Right-handed alpha
Helix 101	AL2	E	167	188	Right-handed alpha
Helix 102	AL3	E	192	197	Right-handed alpha
Helix 103	AL4	E	201	203	Right-handed 310
Helix 104	AL5	E	215	224	Right-handed alpha
Helix 105	AL6	E	227	229	Right-handed 310
Helix 106	AL7	E	243	257	Right-handed alpha
Helix 107	AL8	E	278	290	Right-handed alpha
Helix 108	AL9	E	299	306	Right-handed 310
Helix 109	AM1	E	309	314	Right-handed 310
Helix 110	AM2	E	315	319	Right-handed 310
Helix 111	AM3	E	326	330	Right-handed alpha
Helix 112	AM4	E	343	351	Right-handed 310
Helix 113	AM5	E	382	393	Right-handed alpha
Helix 114	AM6	E	394	419	Right-handed alpha
Helix 115	AM7	E	447	463	Right-handed alpha
Helix 116	AM8	E	488	509	Right-handed alpha
Helix 117	AM9	F	28	30	Right-handed 310
Helix 118	AN1	F	31	52	Right-handed alpha
Helix 119	AN2	F	61	67	Right-handed alpha
Helix 120	AN3	F	80	92	Right-handed alpha
Helix 121	AN4	F	113	127	Right-handed alpha
Helix 122	AN5	F	132	136	Right-handed 310
Helix 123	AN6	F	137	155	Right-handed alpha
Helix 124	AN7	F	167	188	Right-handed alpha
Helix 125	AN8	F	192	197	Right-handed alpha
Helix 126	AN9	F	199	203	Right-handed 310
Helix 127	AO1	F	215	224	Right-handed alpha
Helix 128	AO2	F	227	229	Right-handed 310
Helix 129	AO3	F	243	257	Right-handed alpha
Helix 130	AO4	F	278	290	Right-handed alpha
Helix 131	AO5	F	299	306	Right-handed 310
Helix 132	AO6	F	309	314	Right-handed 310
Helix 133	AO7	F	315	319	Right-handed 310
Helix 134	AO8	F	326	330	Right-handed alpha
Helix 135	AO9	F	343	350	Right-handed 310
Helix 136	AP1	F	369	374	Right-handed 310
Helix 137	AP2	F	382	393	Right-handed alpha
Helix 138	AP3	F	394	419	Right-handed alpha
Helix 139	AP4	F	447	463	Right-handed alpha
Helix 140	AP5	F	488	509	Right-handed alpha

There are 12 sheets in PDB entry 5O5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	A	466	472	parallel
Strand 3	A	475	481	anti-parallel
Strand 4	A	432	437	anti-parallel
Strand 5	A	422	424	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	165	first strand
Strand 2	A	337	341	anti-parallel
Strand 3	A	321	325	anti-parallel
Strand 4	A	292	296	parallel
Strand 5	A	260	267	parallel
Strand 6	A	205	210	parallel
Strand 7	A	231	234	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	165	first strand
Strand 2	B	337	341	anti-parallel
Strand 3	B	321	325	anti-parallel
Strand 4	B	292	297	parallel
Strand 5	B	260	267	parallel
Strand 6	B	205	210	parallel
Strand 7	B	231	234	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	424	first strand
Strand 2	B	432	437	anti-parallel
Strand 3	B	475	481	anti-parallel
Strand 4	B	468	472	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	165	first strand
Strand 2	C	337	341	anti-parallel
Strand 3	C	321	325	anti-parallel
Strand 4	C	292	297	parallel
Strand 5	C	260	267	parallel
Strand 6	C	205	210	parallel
Strand 7	C	231	234	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	422	424	first strand
Strand 2	C	432	437	anti-parallel
Strand 3	C	475	481	anti-parallel
Strand 4	C	468	472	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	165	first strand
Strand 2	D	337	341	anti-parallel
Strand 3	D	321	324	anti-parallel
Strand 4	D	292	297	parallel
Strand 5	D	260	267	parallel
Strand 6	D	205	210	parallel
Strand 7	D	231	234	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	422	424	first strand
Strand 2	D	432	437	anti-parallel
Strand 3	D	475	481	anti-parallel
Strand 4	D	468	472	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	165	first strand
Strand 2	E	337	341	anti-parallel
Strand 3	E	321	325	anti-parallel
Strand 4	E	292	296	parallel
Strand 5	E	260	267	parallel
Strand 6	E	205	210	parallel
Strand 7	E	231	234	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	422	424	first strand
Strand 2	E	432	437	anti-parallel
Strand 3	E	475	481	anti-parallel
Strand 4	E	468	472	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	161	165	first strand
Strand 2	F	337	341	anti-parallel
Strand 3	F	321	325	anti-parallel
Strand 4	F	292	297	parallel
Strand 5	F	260	267	parallel
Strand 6	F	205	210	parallel
Strand 7	F	231	234	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	422	424	first strand
Strand 2	F	432	437	anti-parallel
Strand 3	F	475	481	anti-parallel
Strand 4	F	468	472	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O5C

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O5C