Analysis of interatomic Contacts of Structural Units in PDB entry:
5O5D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O5D entry

There are 2 chains in PDB entry 5O5D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 2	GLY 430
B	GLN 2	GLY 430

There are 18 helices in PDB entry 5O5D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	39	Right-handed 310
Helix 2	AA2	A	63	70	Right-handed alpha
Helix 3	AA3	A	163	168	Right-handed 310
Helix 4	AA4	A	241	244	Right-handed 310
Helix 5	AA5	A	328	339	Right-handed alpha
Helix 6	AA6	A	341	346	Right-handed alpha
Helix 7	AA7	A	347	357	Right-handed alpha
Helix 8	AA8	A	374	379	Right-handed alpha
Helix 9	AA9	A	403	411	Right-handed alpha
Helix 10	AB1	B	36	39	Right-handed 310
Helix 11	AB2	B	63	70	Right-handed alpha
Helix 12	AB3	B	163	168	Right-handed 310
Helix 13	AB4	B	241	244	Right-handed 310
Helix 14	AB5	B	327	339	Right-handed alpha
Helix 15	AB6	B	341	346	Right-handed alpha
Helix 16	AB7	B	347	357	Right-handed alpha
Helix 17	AB8	B	374	379	Right-handed alpha
Helix 18	AB9	B	403	411	Right-handed alpha

There are 14 sheets in PDB entry 5O5D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	19	first strand
Strand 2	A	25	34	anti-parallel
Strand 3	A	106	111	anti-parallel
Strand 4	A	361	368	anti-parallel
Strand 5	A	140	147	anti-parallel
Strand 6	A	216	218	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	71	73	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	90	94	anti-parallel
Strand 3	A	415	419	anti-parallel
Strand 4	A	126	132	anti-parallel
Strand 5	A	288	294	anti-parallel
Strand 6	A	299	305	anti-parallel
Strand 7	A	308	311	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	102	104	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	128	first strand
Strand 2	A	422	425	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	209	first strand
Strand 2	A	236	239	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	225	228	anti-parallel
Strand 3	A	261	263	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	19	first strand
Strand 2	B	25	34	anti-parallel
Strand 3	B	106	111	anti-parallel
Strand 4	B	361	368	anti-parallel
Strand 5	B	140	147	anti-parallel
Strand 6	B	216	218	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	71	73	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	90	94	anti-parallel
Strand 3	B	415	419	anti-parallel
Strand 4	B	126	132	anti-parallel
Strand 5	B	288	294	anti-parallel
Strand 6	B	299	305	anti-parallel
Strand 7	B	308	311	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	102	104	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	128	first strand
Strand 2	B	422	425	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	209	first strand
Strand 2	B	236	239	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	214	first strand
Strand 2	B	225	228	anti-parallel
Strand 3	B	261	263	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O5D

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O5D