Analysis of interatomic Contacts of Structural Units in PDB entry:
5O5O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O5O entry

There are 4 chains in PDB entry 5O5O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 281
B
 MET 1LYS 281
C
 MET 1LYS 281
D
 MET 1LYS 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 5O5O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 25Right-handed alpha
Helix 2
AA2
A
33 35Right-handed 310
Helix 3
AA3
A
36 47Right-handed alpha
Helix 4
AA4
A
63 73Right-handed alpha
Helix 5
AA5
A
88 97Right-handed alpha
Helix 6
AA6
A
113 121Right-handed alpha
Helix 7
AA7
A
123 129Right-handed alpha
Helix 8
AA8
A
140 154Right-handed alpha
Helix 9
AA9
A
170 172Right-handed 310
Helix 10
AB1
A
188 192Right-handed 310
Helix 11
AB2
A
202 211Right-handed alpha
Helix 12
AB3
A
212 236Right-handed alpha
Helix 13
AB4
A
252 268Right-handed alpha
Helix 14
AB5
B
13 25Right-handed alpha
Helix 15
AB6
B
33 35Right-handed 310
Helix 16
AB7
B
36 46Right-handed alpha
Helix 17
AB8
B
64 73Right-handed alpha
Helix 18
AB9
B
88 96Right-handed alpha
Helix 19
AC1
B
116 123Right-handed alpha
Helix 20
AC2
B
123 130Right-handed alpha
Helix 21
AC3
B
140 154Right-handed alpha
Helix 22
AC4
B
170 172Right-handed 310
Helix 23
AC5
B
188 192Right-handed 310
Helix 24
AC6
B
202 211Right-handed alpha
Helix 25
AC7
B
212 236Right-handed alpha
Helix 26
AC8
B
252 268Right-handed alpha
Helix 27
AC9
C
13 25Right-handed alpha
Helix 28
AD1
C
33 35Right-handed 310
Helix 29
AD2
C
36 46Right-handed alpha
Helix 30
AD3
C
63 73Right-handed alpha
Helix 31
AD4
C
88 96Right-handed alpha
Helix 32
AD5
C
111 129Right-handed alpha
Helix 33
AD6
C
140 151Right-handed alpha
Helix 34
AD7
C
170 172Right-handed 310
Helix 35
AD8
C
188 192Right-handed 310
Helix 36
AD9
C
202 212Right-handed alpha
Helix 37
AE1
C
212 236Right-handed alpha
Helix 38
AE2
C
252 268Right-handed alpha
Helix 39
AE3
D
13 25Right-handed alpha
Helix 40
AE4
D
36 46Right-handed alpha
Helix 41
AE5
D
63 73Right-handed alpha
Helix 42
AE6
D
88 96Right-handed alpha
Helix 43
AE7
D
111 123Right-handed alpha
Helix 44
AE8
D
123 129Right-handed alpha
Helix 45
AE9
D
137 139Right-handed 310
Helix 46
AF1
D
140 150Right-handed alpha
Helix 47
AF2
D
170 172Right-handed 310
Helix 48
AF3
D
188 192Right-handed 310
Helix 49
AF4
D
202 212Right-handed alpha
Helix 50
AF5
D
212 236Right-handed alpha
Helix 51
AF6
D
252 268Right-handed alpha
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There are 8 sheets in PDB entry 5O5O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
51 54parallel
Strand 3
A
2 8parallel
Strand 4
A
79 86parallel
Strand 5
A
132 135parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 182first strand
Strand 2
A
240 247parallel
Strand 3
A
161 168parallel
Strand 4
A
272 276parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
51 54parallel
Strand 3
B
2 8parallel
Strand 4
B
79 86parallel
Strand 5
B
132 135parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 182first strand
Strand 2
B
240 247parallel
Strand 3
B
161 168parallel
Strand 4
B
271 276parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 30first strand
Strand 2
C
51 54parallel
Strand 3
C
2 8parallel
Strand 4
C
79 86parallel
Strand 5
C
132 135parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
179 182first strand
Strand 2
C
240 247parallel
Strand 3
C
161 168parallel
Strand 4
C
272 276parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 30first strand
Strand 2
D
51 54parallel
Strand 3
D
2 8parallel
Strand 4
D
79 86parallel
Strand 5
D
132 135parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
179 182first strand
Strand 2
D
240 247parallel
Strand 3
D
161 168parallel
Strand 4
D
272 276parallel
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