Analysis of interatomic Contacts of Structural Units in PDB entry:
5O5P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O5P entry

There are 4 chains in PDB entry 5O5P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 GLN 66TYR 300
2
 ARG 12GLN 271
3
 GLY 1ALA 235
4
 ILE 25ALA 41
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5O5P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
1
69 73Right-handed 310
Helix 2
AA2
1
74 79Right-handed alpha
Helix 3
AA3
1
116 121Right-handed alpha
Helix 4
AA4
1
170 175Right-handed 310
Helix 5
AA5
2
35 37Right-handed 310
Helix 6
AA6
2
90 98Right-handed alpha
Helix 7
AA7
2
176 180Right-handed 310
Helix 8
AA8
2
185 192Right-handed 310
Helix 9
AA9
3
42 46Right-handed 310
Helix 10
AB1
3
64 68Right-handed 310
Helix 11
AB2
3
100 105Right-handed alpha
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There are 11 sheets in PDB entry 5O5P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
83 84first strand
Strand 2
1
254 270anti-parallel
Strand 3
1
123 138anti-parallel
Strand 4
1
193 194anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
88 90first strand
Strand 2
1
254 270anti-parallel
Strand 3
1
123 138anti-parallel
Strand 4
1
203 204anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
103 107first strand
Strand 2
1
238 243anti-parallel
Strand 3
1
152 158anti-parallel
Strand 4
1
180 184anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
32 33first strand
Strand 2
2
207 209parallel
Strand 3
2
99 111anti-parallel
Strand 4
2
246 252anti-parallel
Strand 5
2
69 71anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
64 65first strand
Strand 2
2
246 252anti-parallel
Strand 3
2
99 111anti-parallel
Strand 4
2
254 262anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
127 128first strand
Strand 2
2
226 234anti-parallel
Strand 3
2
78 82anti-parallel
Strand 4
2
154 155anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
127 128first strand
Strand 2
2
226 234anti-parallel
Strand 3
2
121 125anti-parallel
Strand 4
2
194 195anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
51 52first strand
Strand 2
3
213 214anti-parallel
Strand 3
3
115 117anti-parallel
Strand 4
3
166 167anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
70 72first strand
Strand 2
3
208 210anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
83 86first strand
Strand 2
3
189 194anti-parallel
Strand 3
3
129 135anti-parallel
Strand 4
3
153 157anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
177 178first strand
Strand 2
3
107 111anti-parallel
Strand 3
3
221 225anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il