Analysis of interatomic Contacts of Structural Units in PDB entry:
5O65

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O65 entry

There are 3 chains in PDB entry 5O65 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 88	PHE 406
B	PRO 88	PHE 406
C	PRO 88	PHE 406

There are 3 helices in PDB entry 5O65. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	89	101	Right-handed alpha
Helix 2	AA2	B	89	101	Right-handed alpha
Helix 3	AA3	C	89	101	Right-handed alpha

There are 8 sheets in PDB entry 5O65. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	203	first strand
Strand 2	A	164	180	anti-parallel
Strand 3	A	207	215	anti-parallel
Strand 4	A	223	231	anti-parallel
Strand 5	A	266	277	anti-parallel
Strand 6	A	280	291	anti-parallel
Strand 7	A	316	326	anti-parallel
Strand 8	A	331	342	anti-parallel
Strand 9	A	362	374	anti-parallel
Strand 10	A	380	388	anti-parallel
Strand 11	A	396	405	anti-parallel
Strand 12	A	108	119	anti-parallel
Strand 13	A	144	160	anti-parallel
Strand 14	A	164	180	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	296	first strand
Strand 2	A	309	312	anti-parallel
Strand 3	A	345	349	anti-parallel
Strand 4	A	355	357	anti-parallel

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There are 14 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	203	first strand
Strand 2	B	164	180	anti-parallel
Strand 3	B	207	215	anti-parallel
Strand 4	B	223	231	anti-parallel
Strand 5	B	266	277	anti-parallel
Strand 6	B	280	291	anti-parallel
Strand 7	B	316	326	anti-parallel
Strand 8	B	331	342	anti-parallel
Strand 9	B	362	374	anti-parallel
Strand 10	B	380	388	anti-parallel
Strand 11	B	396	404	anti-parallel
Strand 12	B	108	119	anti-parallel
Strand 13	B	144	160	anti-parallel
Strand 14	B	164	180	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	244	first strand
Strand 2	B	254	255	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	296	first strand
Strand 2	B	309	312	anti-parallel
Strand 3	B	345	349	anti-parallel
Strand 4	B	355	357	anti-parallel

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There are 14 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	203	first strand
Strand 2	C	164	179	anti-parallel
Strand 3	C	207	215	anti-parallel
Strand 4	C	223	231	anti-parallel
Strand 5	C	266	277	anti-parallel
Strand 6	C	280	291	anti-parallel
Strand 7	C	316	326	anti-parallel
Strand 8	C	331	342	anti-parallel
Strand 9	C	362	374	anti-parallel
Strand 10	C	380	388	anti-parallel
Strand 11	C	396	405	anti-parallel
Strand 12	C	108	120	anti-parallel
Strand 13	C	145	160	anti-parallel
Strand 14	C	164	179	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	244	first strand
Strand 2	C	254	255	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	296	first strand
Strand 2	C	309	312	anti-parallel
Strand 3	C	346	349	anti-parallel
Strand 4	C	355	356	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O65

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O65