Analysis of interatomic Contacts of Structural Units in PDB entry:
5O68

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O68 entry

There are 12 chains in PDB entry 5O68 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 88	PHE 406
B	ALA 89	PHE 406
C	PRO 88	PHE 406
D	PRO 88	PHE 406
E	ALA 89	PHE 406
F	ALA 89	PHE 406
G	PRO 88	PHE 406
H	ALA 89	PHE 406
I	ALA 89	PHE 406
J	PRO 88	PHE 406
K	ALA 89	PHE 406
L	ALA 89	PHE 406

There are 12 helices in PDB entry 5O68. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	89	101	Right-handed alpha
Helix 2	AA2	B	90	101	Right-handed alpha
Helix 3	AA3	C	89	100	Right-handed alpha
Helix 4	AA4	D	89	101	Right-handed alpha
Helix 5	AA5	E	90	101	Right-handed alpha
Helix 6	AA6	F	90	101	Right-handed alpha
Helix 7	AA7	G	89	101	Right-handed alpha
Helix 8	AA8	H	90	101	Right-handed alpha
Helix 9	AA9	I	90	101	Right-handed alpha
Helix 10	AB1	J	89	101	Right-handed alpha
Helix 11	AB2	K	90	101	Right-handed alpha
Helix 12	AB3	L	90	101	Right-handed alpha

There are 37 sheets in PDB entry 5O68. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK,

There are 13 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	158	first strand
Strand 2	A	108	119	anti-parallel
Strand 3	A	396	406	anti-parallel
Strand 4	A	382	388	anti-parallel
Strand 5	A	362	370	anti-parallel
Strand 6	A	333	342	anti-parallel
Strand 7	A	316	325	anti-parallel
Strand 8	A	280	291	anti-parallel
Strand 9	A	266	277	anti-parallel
Strand 10	A	223	231	anti-parallel
Strand 11	A	207	212	anti-parallel
Strand 12	A	164	178	anti-parallel
Strand 13	A	146	160	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	178	first strand
Strand 2	A	196	199	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	296	first strand
Strand 2	A	309	312	anti-parallel
Strand 3	A	346	349	anti-parallel

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There are 13 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	158	first strand
Strand 2	B	108	119	anti-parallel
Strand 3	B	396	404	anti-parallel
Strand 4	B	379	388	anti-parallel
Strand 5	B	362	373	anti-parallel
Strand 6	B	331	342	anti-parallel
Strand 7	B	316	326	anti-parallel
Strand 8	B	280	289	anti-parallel
Strand 9	B	266	277	anti-parallel
Strand 10	B	223	231	anti-parallel
Strand 11	B	207	215	anti-parallel
Strand 12	B	164	178	anti-parallel
Strand 13	B	146	160	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	178	first strand
Strand 2	B	196	199	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	296	first strand
Strand 2	B	309	312	anti-parallel
Strand 3	B	346	349	anti-parallel

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There are 13 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	158	first strand
Strand 2	C	108	119	anti-parallel
Strand 3	C	396	405	anti-parallel
Strand 4	C	382	388	anti-parallel
Strand 5	C	362	373	anti-parallel
Strand 6	C	331	342	anti-parallel
Strand 7	C	316	326	anti-parallel
Strand 8	C	280	287	anti-parallel
Strand 9	C	266	277	anti-parallel
Strand 10	C	224	231	anti-parallel
Strand 11	C	207	215	anti-parallel
Strand 12	C	164	178	anti-parallel
Strand 13	C	146	160	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	197	199	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	312	first strand
Strand 2	C	345	348	anti-parallel
Strand 3	C	355	357	anti-parallel

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There are 14 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	160	first strand
Strand 2	D	164	170	anti-parallel
Strand 3	D	207	215	anti-parallel
Strand 4	D	223	231	anti-parallel
Strand 5	D	266	274	anti-parallel
Strand 6	D	280	291	anti-parallel
Strand 7	D	316	325	anti-parallel
Strand 8	D	331	342	anti-parallel
Strand 9	D	362	373	anti-parallel
Strand 10	D	382	388	anti-parallel
Strand 11	D	396	406	anti-parallel
Strand 12	D	108	119	anti-parallel
Strand 13	D	146	158	anti-parallel
Strand 14	D	173	178	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	277	first strand
Strand 2	D	280	283	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	296	first strand
Strand 2	D	309	312	anti-parallel
Strand 3	D	346	349	anti-parallel
Strand 4	D	354	356	anti-parallel

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There are 13 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	158	first strand
Strand 2	E	108	119	anti-parallel
Strand 3	E	396	404	anti-parallel
Strand 4	E	379	388	anti-parallel
Strand 5	E	366	373	anti-parallel
Strand 6	E	331	342	anti-parallel
Strand 7	E	316	326	anti-parallel
Strand 8	E	280	289	anti-parallel
Strand 9	E	266	277	anti-parallel
Strand 10	E	223	231	anti-parallel
Strand 11	E	207	215	anti-parallel
Strand 12	E	164	174	anti-parallel
Strand 13	E	150	160	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	179	first strand
Strand 2	E	195	197	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	294	296	first strand
Strand 2	E	309	312	anti-parallel
Strand 3	E	346	349	anti-parallel

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There are 12 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	382	384	first strand
Strand 2	F	396	406	anti-parallel
Strand 3	F	108	119	anti-parallel
Strand 4	F	147	160	anti-parallel
Strand 5	F	164	177	anti-parallel
Strand 6	F	207	215	anti-parallel
Strand 7	F	224	231	anti-parallel
Strand 8	F	266	277	anti-parallel
Strand 9	F	280	289	anti-parallel
Strand 10	F	316	326	anti-parallel
Strand 11	F	331	342	anti-parallel
Strand 12	F	366	373	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	175	177	first strand
Strand 2	F	197	199	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	310	312	first strand
Strand 2	F	346	348	anti-parallel

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There are 13 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	147	158	first strand
Strand 2	G	108	119	anti-parallel
Strand 3	G	396	406	anti-parallel
Strand 4	G	382	388	anti-parallel
Strand 5	G	363	370	anti-parallel
Strand 6	G	331	341	anti-parallel
Strand 7	G	316	328	anti-parallel
Strand 8	G	280	291	anti-parallel
Strand 9	G	266	277	anti-parallel
Strand 10	G	225	231	anti-parallel
Strand 11	G	207	213	anti-parallel
Strand 12	G	164	178	anti-parallel
Strand 13	G	146	159	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	175	177	first strand
Strand 2	G	197	199	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	294	296	first strand
Strand 2	G	309	312	anti-parallel
Strand 3	G	345	349	anti-parallel
Strand 4	G	354	357	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	396	405	first strand
Strand 2	H	108	119	anti-parallel
Strand 3	H	146	158	anti-parallel
Strand 4	H	175	179	anti-parallel
Strand 5	H	195	199	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	152	158	first strand
Strand 2	H	165	172	anti-parallel
Strand 3	H	207	211	anti-parallel
Strand 4	H	229	231	anti-parallel

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There are 8 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	384	388	first strand
Strand 2	H	362	373	anti-parallel
Strand 3	H	331	342	anti-parallel
Strand 4	H	316	325	anti-parallel
Strand 5	H	280	291	anti-parallel
Strand 6	H	266	277	anti-parallel
Strand 7	H	223	227	anti-parallel
Strand 8	H	212	215	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	294	296	first strand
Strand 2	H	309	312	anti-parallel
Strand 3	H	346	349	anti-parallel

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There are 13 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	271	277	first strand
Strand 2	I	280	289	anti-parallel
Strand 3	I	316	326	anti-parallel
Strand 4	I	331	342	anti-parallel
Strand 5	I	362	373	anti-parallel
Strand 6	I	382	388	anti-parallel
Strand 7	I	396	405	anti-parallel
Strand 8	I	108	119	anti-parallel
Strand 9	I	147	160	anti-parallel
Strand 10	I	164	174	anti-parallel
Strand 11	I	207	212	anti-parallel
Strand 12	I	226	231	anti-parallel
Strand 13	I	266	270	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	175	177	first strand
Strand 2	I	197	199	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	309	312	first strand
Strand 2	I	346	349	anti-parallel

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There are 12 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	265	277	first strand
Strand 2	J	280	292	anti-parallel
Strand 3	J	316	326	anti-parallel
Strand 4	J	331	342	anti-parallel
Strand 5	J	362	373	anti-parallel
Strand 6	J	382	388	anti-parallel
Strand 7	J	396	405	anti-parallel
Strand 8	J	108	119	anti-parallel
Strand 9	J	146	159	anti-parallel
Strand 10	J	164	178	anti-parallel
Strand 11	J	207	212	anti-parallel
Strand 12	J	226	231	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	175	178	first strand
Strand 2	J	196	199	anti-parallel

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There are 13 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	147	158	first strand
Strand 2	K	108	119	anti-parallel
Strand 3	K	396	404	anti-parallel
Strand 4	K	384	388	anti-parallel
Strand 5	K	362	373	anti-parallel
Strand 6	K	331	342	anti-parallel
Strand 7	K	316	326	anti-parallel
Strand 8	K	280	289	anti-parallel
Strand 9	K	266	277	anti-parallel
Strand 10	K	223	231	anti-parallel
Strand 11	K	207	212	anti-parallel
Strand 12	K	164	178	anti-parallel
Strand 13	K	146	160	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	175	179	first strand
Strand 2	K	195	199	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	294	296	first strand
Strand 2	K	309	312	anti-parallel
Strand 3	K	346	349	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	212	215	first strand
Strand 2	K	224	226	anti-parallel

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There are 11 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	396	405	first strand
Strand 2	L	108	119	anti-parallel
Strand 3	L	147	160	anti-parallel
Strand 4	L	164	177	anti-parallel
Strand 5	L	207	212	anti-parallel
Strand 6	L	226	231	anti-parallel
Strand 7	L	266	277	anti-parallel
Strand 8	L	280	289	anti-parallel
Strand 9	L	316	326	anti-parallel
Strand 10	L	331	342	anti-parallel
Strand 11	L	362	373	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	175	177	first strand
Strand 2	L	197	199	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	309	312	first strand
Strand 2	L	346	349	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O68

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O68