Analysis of interatomic Contacts of Structural Units in PDB entry:
5O6A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5O6A entry

There are 6 chains in PDB entry 5O6A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	LEU 492
B	SER 1	LEU 492
C	SER 1	LEU 492
D	VAL 2	PRO 72
E	VAL 2	PRO 72
F	VAL 2	PRO 72

There are 57 helices in PDB entry 5O6A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	5	Right-handed 310
Helix 2	AA2	A	82	86	Right-handed 310
Helix 3	AA3	A	193	197	Right-handed 310
Helix 4	AA4	A	216	221	Right-handed alpha
Helix 5	AA5	A	237	240	Right-handed 310
Helix 6	AA6	A	260	268	Right-handed alpha
Helix 7	AA7	A	399	413	Right-handed alpha
Helix 8	AA8	A	414	420	Right-handed alpha
Helix 9	AA9	A	431	443	Right-handed alpha
Helix 10	AB1	A	443	448	Right-handed alpha
Helix 11	AB2	A	453	470	Right-handed alpha
Helix 12	AB3	A	475	481	Right-handed 310
Helix 13	AB4	A	482	487	Right-handed alpha
Helix 14	AB5	A	488	492	Right-handed 310
Helix 15	AB6	B	1	5	Right-handed 310
Helix 16	AB7	B	82	86	Right-handed 310
Helix 17	AB8	B	193	197	Right-handed 310
Helix 18	AB9	B	216	221	Right-handed alpha
Helix 19	AC1	B	237	240	Right-handed 310
Helix 20	AC2	B	260	268	Right-handed alpha
Helix 21	AC3	B	399	413	Right-handed alpha
Helix 22	AC4	B	414	420	Right-handed alpha
Helix 23	AC5	B	431	443	Right-handed alpha
Helix 24	AC6	B	443	448	Right-handed alpha
Helix 25	AC7	B	453	470	Right-handed alpha
Helix 26	AC8	B	475	481	Right-handed 310
Helix 27	AC9	B	482	487	Right-handed alpha
Helix 28	AD1	B	488	492	Right-handed 310
Helix 29	AD2	C	1	5	Right-handed 310
Helix 30	AD3	C	82	86	Right-handed 310
Helix 31	AD4	C	193	197	Right-handed 310
Helix 32	AD5	C	216	221	Right-handed alpha
Helix 33	AD6	C	237	240	Right-handed 310
Helix 34	AD7	C	260	268	Right-handed alpha
Helix 35	AD8	C	399	413	Right-handed alpha
Helix 36	AD9	C	414	420	Right-handed alpha
Helix 37	AE1	C	431	443	Right-handed alpha
Helix 38	AE2	C	443	448	Right-handed alpha
Helix 39	AE3	C	453	470	Right-handed alpha
Helix 40	AE4	C	475	481	Right-handed 310
Helix 41	AE5	C	482	487	Right-handed alpha
Helix 42	AE6	C	488	492	Right-handed 310
Helix 43	AE7	D	22	27	Right-handed alpha
Helix 44	AE8	D	27	39	Right-handed alpha
Helix 45	AE9	D	39	46	Right-handed alpha
Helix 46	AF1	D	46	51	Right-handed alpha
Helix 47	AF2	D	56	71	Right-handed alpha
Helix 48	AF3	E	22	27	Right-handed alpha
Helix 49	AF4	E	27	39	Right-handed alpha
Helix 50	AF5	E	39	44	Right-handed alpha
Helix 51	AF6	E	46	51	Right-handed alpha
Helix 52	AF7	E	56	71	Right-handed alpha
Helix 53	AF8	F	22	27	Right-handed alpha
Helix 54	AF9	F	27	39	Right-handed alpha
Helix 55	AG1	F	39	46	Right-handed alpha
Helix 56	AG2	F	46	51	Right-handed alpha
Helix 57	AG3	F	56	71	Right-handed alpha

There are 30 sheets in PDB entry 5O6A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	31	33	parallel
Strand 3	A	41	49	anti-parallel
Strand 4	A	138	145	anti-parallel
Strand 5	A	161	165	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	290	293	anti-parallel
Strand 3	A	181	186	anti-parallel
Strand 4	A	172	175	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	287	288	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	72	first strand
Strand 2	A	111	121	anti-parallel
Strand 3	A	90	97	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	213	first strand
Strand 2	A	273	274	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	244	first strand
Strand 2	A	254	256	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	277	first strand
Strand 2	A	280	281	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	320	first strand
Strand 2	A	326	332	anti-parallel
Strand 3	A	371	375	anti-parallel
Strand 4	A	356	357	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	363	364	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	345	first strand
Strand 2	A	379	385	anti-parallel
Strand 3	A	389	394	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	31	33	parallel
Strand 3	B	41	49	anti-parallel
Strand 4	B	138	145	anti-parallel
Strand 5	B	161	165	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	22	first strand
Strand 2	B	290	293	anti-parallel
Strand 3	B	181	186	anti-parallel
Strand 4	B	172	175	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	26	first strand
Strand 2	B	287	288	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	72	first strand
Strand 2	B	111	121	anti-parallel
Strand 3	B	90	97	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	213	first strand
Strand 2	B	273	274	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	244	first strand
Strand 2	B	254	256	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	277	first strand
Strand 2	B	280	281	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	320	first strand
Strand 2	B	326	332	anti-parallel
Strand 3	B	371	375	anti-parallel
Strand 4	B	356	357	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	363	364	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	345	first strand
Strand 2	B	379	385	anti-parallel
Strand 3	B	389	394	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	31	33	parallel
Strand 3	C	41	49	anti-parallel
Strand 4	C	138	145	anti-parallel
Strand 5	C	161	165	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	22	first strand
Strand 2	C	290	293	anti-parallel
Strand 3	C	181	186	anti-parallel
Strand 4	C	172	175	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	26	first strand
Strand 2	C	287	288	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	72	first strand
Strand 2	C	111	121	anti-parallel
Strand 3	C	90	97	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	213	first strand
Strand 2	C	273	274	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	244	first strand
Strand 2	C	254	256	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	277	first strand
Strand 2	C	280	281	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	320	first strand
Strand 2	C	326	332	anti-parallel
Strand 3	C	371	375	anti-parallel
Strand 4	C	356	357	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	339	first strand
Strand 2	C	363	364	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	345	first strand
Strand 2	C	379	385	anti-parallel
Strand 3	C	389	394	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5O6A

Analysis of interatomic Contacts of Structural Units in PDB entry:
5O6A