Analysis of interatomic Contacts of Structural Units in PDB entry:
5O6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5O6D entry

There are 4 chains in PDB entry 5O6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 237GLU 778
B
 LEU 237GLU 778
C
 T 3 T 8
D
 T 3 T 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5O6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
238 251Right-handed alpha
Helix 2
AA2
A
263 272Right-handed alpha
Helix 3
AA3
A
272 277Right-handed alpha
Helix 4
AA4
A
291 296Right-handed alpha
Helix 5
AA5
A
302 307Right-handed alpha
Helix 6
AA6
A
314 323Right-handed alpha
Helix 7
AA7
A
325 335Right-handed alpha
Helix 8
AA8
A
343 346Right-handed 310
Helix 9
AA9
A
347 363Right-handed alpha
Helix 10
AB1
A
395 398Right-handed 310
Helix 11
AB2
A
399 406Right-handed alpha
Helix 12
AB3
A
421 434Right-handed alpha
Helix 13
AB4
A
437 447Right-handed alpha
Helix 14
AB5
A
464 477Right-handed alpha
Helix 15
AB6
A
496 507Right-handed alpha
Helix 16
AB7
A
544 557Right-handed alpha
Helix 17
AB8
A
564 569Right-handed alpha
Helix 18
AB9
A
572 580Right-handed alpha
Helix 19
AC1
A
581 583Right-handed 310
Helix 20
AC2
A
591 594Right-handed 310
Helix 21
AC3
A
595 600Right-handed alpha
Helix 22
AC4
A
619 623Right-handed 310
Helix 23
AC5
A
638 648Right-handed alpha
Helix 24
AC6
A
703 708Right-handed alpha
Helix 25
AC7
A
726 734Right-handed alpha
Helix 26
AC8
A
747 751Right-handed 310
Helix 27
AC9
A
754 761Right-handed alpha
Helix 28
AD1
A
767 770Right-handed 310
Helix 29
AD2
A
771 778Right-handed alpha
Helix 30
AD3
B
238 251Right-handed alpha
Helix 31
AD4
B
263 280Right-handed alpha
Helix 32
AD5
B
290 298Right-handed alpha
Helix 33
AD6
B
302 307Right-handed alpha
Helix 34
AD7
B
314 323Right-handed alpha
Helix 35
AD8
B
325 335Right-handed alpha
Helix 36
AD9
B
343 346Right-handed 310
Helix 37
AE1
B
347 362Right-handed alpha
Helix 38
AE2
B
399 406Right-handed alpha
Helix 39
AE3
B
421 434Right-handed alpha
Helix 40
AE4
B
437 447Right-handed alpha
Helix 41
AE5
B
464 477Right-handed alpha
Helix 42
AE6
B
496 507Right-handed alpha
Helix 43
AE7
B
544 555Right-handed alpha
Helix 44
AE8
B
562 571Right-handed alpha
Helix 45
AE9
B
571 580Right-handed alpha
Helix 46
AF1
B
591 600Right-handed alpha
Helix 47
AF2
B
615 620Right-handed 310
Helix 48
AF3
B
638 649Right-handed alpha
Helix 49
AF4
B
704 708Right-handed alpha
Helix 50
AF5
B
726 734Right-handed alpha
Helix 51
AF6
B
747 751Right-handed 310
Helix 52
AF7
B
754 762Right-handed alpha
Helix 53
AF8
B
770 775Right-handed alpha
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There are 9 sheets in PDB entry 5O6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 301first strand
Strand 2
A
284 288parallel
Strand 3
A
337 341parallel
Strand 4
A
372 376parallel
Strand 5
A
254 257parallel
Strand 6
A
408 411parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
701 702first strand
Strand 2
A
459 462parallel
Strand 3
A
715 718parallel
Strand 4
A
741 744parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 492first strand
Strand 2
A
689 693anti-parallel
Strand 3
A
676 680anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 522first strand
Strand 2
A
536 543anti-parallel
Strand 3
A
656 662anti-parallel
Strand 4
A
668 672anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 301first strand
Strand 2
B
284 288parallel
Strand 3
B
337 341parallel
Strand 4
B
372 376parallel
Strand 5
B
254 257parallel
Strand 6
B
408 411parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
701 703first strand
Strand 2
B
459 462parallel
Strand 3
B
715 718parallel
Strand 4
B
741 744parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
484 487first strand
Strand 2
B
512 515anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 492first strand
Strand 2
B
689 693anti-parallel
Strand 3
B
676 680anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
668 672first strand
Strand 2
B
656 662anti-parallel
Strand 3
B
536 543anti-parallel
Strand 4
B
520 523anti-parallel
Strand 5
B
696 698anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il